Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 8.8e-78 293.5 144 100.0
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 3.7e-60 235.0 150 80.7
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 7.8e-58 227.3 151 77.5
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.9e-35 152.9 147 52.4
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 6.6e-33 144.4 154 46.8
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 2.6e-29 132.5 145 47.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 7.6e-29 131.0 141 50.4
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 3.2e-27 125.6 145 45.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 5.4e-27 124.8 126 49.2
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 7.1e-27 124.4 149 46.3
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 2.1e-26 122.9 140 59.3
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 3.5e-26 122.1 145 43.4
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 6.0e-26 121.3 129 48.1
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 7.8e-26 120.9 140 46.4
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.3e-25 119.4 147 42.2
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.3e-25 119.4 140 46.4
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 3.9e-25 118.6 138 42.8
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 3.9e-25 118.6 138 44.9
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 5.1e-25 118.2 138 47.1
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 5.1e-25 118.2 138 47.1
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 8.7e-25 117.5 138 47.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.1e-24 117.1 140 41.4
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.5e-24 116.7 146 41.8
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 1.5e-24 116.7 147 44.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.9e-24 116.3 139 46.0
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.9e-24 116.3 153 41.2
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 3.3e-24 115.5 119 50.4
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.3e-24 115.5 143 42.0
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 4.3e-24 115.2 135 45.2
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 4.3e-24 115.2 141 46.1
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 4.3e-24 115.2 140 42.1
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 5.6e-24 114.8 138 44.2
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 5.6e-24 114.8 141 46.1
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 9.6e-24 114.0 144 45.1
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 2.1e-23 112.8 151 39.7
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.8e-23 112.5 142 43.7
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 3.6e-23 112.1 137 45.3
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 4.7e-23 111.7 142 46.5
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 6.2e-23 111.3 145 42.8
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 6.2e-23 111.3 142 43.0
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 6.2e-23 111.3 142 43.0
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 8.1e-23 110.9 135 40.7
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.1e-23 110.9 143 42.0
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 1.1e-22 110.5 135 43.0
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.4e-22 110.2 136 40.4
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.8e-22 109.8 134 42.5
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.8e-22 109.8 140 42.1
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.4e-22 109.4 141 41.8
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 3.1e-22 109.0 135 45.2
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 3.1e-22 109.0 135 45.2
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 3.1e-22 109.0 135 45.2
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.1e-22 109.0 135 42.2
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 4.0e-22 108.6 137 40.9
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 4.0e-22 108.6 135 43.0
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 4.0e-22 108.6 138 38.4
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.2e-22 108.2 139 46.0
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 5.2e-22 108.2 141 41.1
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 6.9e-22 107.8 136 43.4
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.0e-22 107.5 135 42.2
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 9.0e-22 107.5 136 42.6
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 1.2e-21 107.1 142 38.7
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.2e-21 107.1 102 48.0
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.2e-21 107.1 135 41.5
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.5e-21 106.7 73 61.6
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.5e-21 106.7 73 61.6
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 1.5e-21 106.7 121 45.5
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.5e-21 106.7 121 45.5
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.5e-21 106.7 124 43.5
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-21 106.7 157 36.3
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.6e-21 105.9 141 41.8
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.6e-21 105.9 135 42.2
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 2.6e-21 105.9 134 40.3
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.4e-21 105.5 140 45.7
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 3.4e-21 105.5 138 43.5
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.4e-21 105.1 137 40.1
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 4.4e-21 105.1 133 43.6
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 5.8e-21 104.8 142 43.7
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 7.6e-21 104.4 140 40.7
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 9.9e-21 104.0 137 41.6
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.3e-20 103.6 141 41.1
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 2.2e-20 102.8 138 42.0
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 2.2e-20 102.8 138 42.0
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 2.9e-20 102.4 140 41.4
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.8e-20 102.1 139 38.1
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 3.8e-20 102.1 139 38.1
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.4e-20 101.3 88 51.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 6.4e-20 101.3 144 38.2
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 6.4e-20 101.3 140 40.0
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 6.4e-20 101.3 142 38.7
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.4e-20 100.9 135 41.5
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 8.4e-20 100.9 134 38.1
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 8.4e-20 100.9 141 40.4
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.1e-19 100.5 134 38.8
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.1e-19 100.5 141 41.1
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.4e-19 100.1 69 63.8
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 2.4e-19 99.4 135 43.0
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 2.4e-19 99.4 142 36.6
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.4e-19 99.4 142 37.3
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.4e-19 99.4 142 38.0
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.4e-19 99.4 142 38.0
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.4e-19 99.4 142 38.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.4e-19 99.4 142 38.0
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.2e-19 98.6 140 40.7
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 4.2e-19 98.6 73 58.9
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 5.4e-19 98.2 138 39.1
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 5.4e-19 98.2 74 60.8
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 9.3e-19 97.4 98 46.9
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 9.3e-19 97.4 99 50.5
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.1e-18 96.3 138 39.1
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 2.1e-18 96.3 146 37.0
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 2.7e-18 95.9 144 41.7
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 2.7e-18 95.9 73 53.4
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.6e-18 95.1 135 38.5
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 4.6e-18 95.1 134 38.1
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 7.8e-18 94.4 116 40.5
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.0e-17 94.0 73 53.4
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.0e-17 94.0 75 57.3
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.3e-17 92.8 72 61.1
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.3e-17 92.8 82 48.8
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.0e-17 92.4 144 40.3
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.1e-16 90.5 138 36.2
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.1e-16 90.5 116 40.5
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 7.3e-16 87.8 120 38.3
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 7.3e-16 87.8 117 40.2
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 9.6e-16 87.4 78 47.4
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 4.8e-15 85.1 77 48.1
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.4e-14 82.8 100 44.0
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.3e-12 77.0 142 35.9
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.7e-12 76.6 154 31.2
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 6.4e-12 74.7 130 38.5
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 6.4e-12 74.7 141 36.2
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.1e-11 73.9 138 31.9
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 2.4e-11 72.8 134 34.3
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 5.4e-11 71.6 136 32.4
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.6e-10 70.1 65 43.1
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 2.1e-10 69.7 138 34.8
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.1e-10 69.7 67 47.8
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.3e-09 67.0 153 31.4
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 3.9e-09 65.5 137 35.0
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.5e-08 63.5 144 30.6
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.9e-08 63.2 52 48.1
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 4.3e-08 62.0 122 30.3
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 4.8e-07 58.5 126 31.0
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 2.4e-06 56.2 124 28.2
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 3.1e-06 55.8 66 36.4
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 9.0e-06 54.3 54 42.6


User provided reference genes

Program Settings