Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 1.3e-151 539.7 267 100.0
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 2.9e-106 389.0 267 76.0
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 1.9e-94 349.7 277 67.9
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 1.4e-92 343.6 279 65.9
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 1.2e-91 340.5 271 67.9
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 5.8e-91 338.2 281 65.8
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 2.2e-90 336.3 255 69.4
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 3.7e-90 335.5 268 66.8
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 4.9e-90 335.1 272 65.8
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 6.4e-90 334.7 193 84.5
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 8.4e-90 334.3 192 84.9
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 8.4e-90 334.3 198 82.3
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 1.1e-89 334.0 271 65.7
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 2.4e-89 332.8 193 82.9
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 4.1e-89 332.0 281 67.3
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 4.1e-89 332.0 192 83.3
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 7.1e-89 331.3 267 65.9
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 9.2e-89 330.9 266 65.8
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 1.6e-88 330.1 265 65.3
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 2.7e-88 329.3 191 83.8
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 4.6e-88 328.6 268 67.9
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 4.6e-88 328.6 265 65.3
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 4.6e-88 328.6 267 65.9
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 6.0e-88 328.2 266 65.0
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 7.8e-88 327.8 192 83.3
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 7.8e-88 327.8 271 64.9
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 7.8e-88 327.8 284 63.7
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 1.0e-87 327.4 265 65.7
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 1.0e-87 327.4 189 84.1
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 1.0e-87 327.4 192 82.8
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 1.3e-87 327.0 269 63.9
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 1.3e-87 327.0 280 62.5
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 1.3e-87 327.0 268 65.7
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 1.7e-87 326.6 271 63.5
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 1.7e-87 326.6 207 78.7
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 1.7e-87 326.6 220 75.9
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 3.9e-87 325.5 312 60.3
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 3.9e-87 325.5 275 64.4
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 5.1e-87 325.1 272 64.3
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 5.1e-87 325.1 279 63.8
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 6.6e-87 324.7 281 60.5
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 6.6e-87 324.7 277 63.5
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 6.6e-87 324.7 280 62.5
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 8.6e-87 324.3 264 65.2
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 1.1e-86 323.9 273 64.1
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 1.1e-86 323.9 281 63.7
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 1.5e-86 323.6 269 63.9
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 1.5e-86 323.6 281 60.5
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 1.5e-86 323.6 272 66.2
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 1.9e-86 323.2 273 62.6
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 2.5e-86 322.8 268 62.3
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 2.5e-86 322.8 286 62.2
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.5e-86 322.8 189 83.1
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 2.5e-86 322.8 271 63.5
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 2.5e-86 322.8 220 73.6
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 3.3e-86 322.4 191 81.7
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 3.3e-86 322.4 279 63.8
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 3.3e-86 322.4 193 82.4
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 3.3e-86 322.4 288 62.8
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 4.3e-86 322.0 220 73.2
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 5.6e-86 321.6 196 80.6
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 5.6e-86 321.6 193 81.9
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 7.3e-86 321.2 196 80.6
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 1.2e-85 320.5 193 81.9
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 1.2e-85 320.5 287 62.7
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 1.6e-85 320.1 193 81.3
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 2.1e-85 319.7 194 81.4
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 2.8e-85 319.3 266 63.2
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 3.6e-85 318.9 207 77.3
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 3.6e-85 318.9 279 63.1
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 4.7e-85 318.5 176 88.1
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 6.2e-85 318.2 206 76.7
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 8.1e-85 317.8 281 62.6
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 1.4e-84 317.0 261 63.6
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 1.4e-84 317.0 188 80.3
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 1.8e-84 316.6 182 84.1
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 2.4e-84 316.2 280 62.1
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 5.2e-84 315.1 267 64.0
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 5.2e-84 315.1 267 64.0
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 6.8e-84 314.7 192 81.2
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 6.8e-84 314.7 228 70.6
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 8.9e-84 314.3 309 58.9
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 1.2e-83 313.9 251 63.3
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 1.5e-83 313.5 191 80.1
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 2.0e-83 313.2 187 80.7
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 2.0e-83 313.2 183 81.4
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 2.6e-83 312.8 273 60.4
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 4.4e-83 312.0 312 58.0
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 4.4e-83 312.0 187 81.8
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 5.8e-83 311.6 283 61.1
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 1.3e-82 310.5 228 70.2
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 1.7e-82 310.1 261 63.6
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 4.9e-82 308.5 267 65.2
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 6.4e-82 308.1 266 63.2
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 6.4e-82 308.1 266 63.2
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 8.4e-82 307.8 239 66.9
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 1.4e-81 307.0 266 61.7
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 1.4e-81 307.0 179 81.0
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 3.2e-81 305.8 261 63.2
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 3.2e-81 305.8 165 89.7
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 4.2e-81 305.4 261 63.2
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 7.1e-81 304.7 194 76.3
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 2.7e-80 302.8 208 75.0
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 4.6e-80 302.0 220 72.3
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 6.0e-80 301.6 273 59.0
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 6.0e-80 301.6 270 61.5
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 1.3e-79 300.4 180 78.3
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.7e-79 300.1 184 79.9
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 2.3e-79 299.7 335 50.7
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 3.0e-79 299.3 261 61.3
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 1.1e-78 297.4 218 69.3
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 2.1e-77 293.1 191 75.4
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 2.4e-76 289.7 181 75.1
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 5.3e-76 288.5 264 59.8
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 1.2e-75 287.3 314 52.5
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 4.2e-73 278.9 251 61.8
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 1.2e-72 277.3 180 72.2
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 2.7e-72 276.2 155 87.1
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 6.0e-72 275.0 146 91.1
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 1.3e-71 273.9 161 83.2
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 1.3e-71 273.9 179 76.5
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.1e-70 270.8 149 87.9
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 1.5e-70 270.4 269 56.1
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 5.6e-70 268.5 189 69.8
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 2.4e-65 253.1 184 65.2
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 5.5e-65 251.9 170 73.5
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 7.1e-65 251.5 361 44.0
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 3.4e-59 232.6 226 58.4
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 7.1e-57 224.9 176 59.1
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 1.6e-56 223.8 220 60.5
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 2.1e-56 223.4 175 64.6
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 2.7e-56 223.0 191 61.8
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 3.0e-55 219.5 134 80.6
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 1.9e-54 216.9 179 59.8
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 7.4e-54 214.9 164 70.1
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 1.2e-51 207.6 141 76.6
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 3.4e-51 206.1 140 72.9
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 4.1e-44 182.6 189 47.6
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 1.2e-43 181.0 173 54.9
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 4.6e-40 169.1 164 49.4
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 2.3e-39 166.8 219 50.2
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 5.3e-36 155.6 93 81.7
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 2.2e-34 150.2 153 54.9
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 8.5e-34 148.3 146 52.7
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 3.2e-33 146.4 127 60.6
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 3.2e-33 146.4 127 60.6
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 2.0e-30 137.1 77 87.0
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 1.3e-29 134.4 87 75.9
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 1.8e-28 130.6 173 49.1
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 4.1e-28 129.4 99 70.7
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 2.2e-26 123.6 161 47.2
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 7.2e-25 118.6 95 65.3
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 1.6e-24 117.5 91 73.6
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 8.0e-24 115.2 93 65.6
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 8.8e-23 111.7 150 50.0
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 3.3e-22 109.8 107 55.1
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 5.9e-19 99.0 94 61.7
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.2e-18 97.1 105 53.3
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 5.0e-18 95.9 70 67.1
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 8.5e-18 95.1 56 80.4
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 1.2e-16 91.3 84 59.5
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 1.0e-15 88.2 46 91.3
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 1.8e-15 87.4 47 87.2
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 1.8e-15 87.4 47 87.2
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 6.8e-15 85.5 66 65.2
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 2.6e-14 83.6 58 69.0
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 1.3e-13 81.3 62 67.7
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 1.8e-12 77.4 52 73.1
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 1.3e-10 71.2 69 60.9
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 8.5e-10 68.6 36 91.7


User provided reference genes

Program Settings