Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 6.0e-109 397.5 199 100.0
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 9.0e-81 303.9 170 87.6
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.5e-80 303.1 170 86.5
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 2.6e-80 302.4 170 85.9
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 5.7e-59 231.5 169 68.0
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 9.7e-59 230.7 174 65.5
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 4.8e-58 228.4 178 62.4
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.4e-57 226.1 198 58.1
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 5.3e-57 224.9 174 64.4
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 6.9e-57 224.6 172 64.0
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.2e-56 223.8 169 65.1
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.5e-56 223.4 174 65.5
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 2.6e-56 222.6 182 62.6
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 3.4e-56 222.2 175 63.4
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 1.7e-55 219.9 172 64.0
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 2.2e-55 219.5 173 63.0
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 2.9e-55 219.2 174 63.2
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 5.0e-55 218.4 174 63.2
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 6.5e-55 218.0 182 62.1
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.1e-54 217.2 173 62.4
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 1.1e-54 217.2 174 62.1
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.4e-54 216.9 174 63.8
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.4e-54 216.9 178 59.0
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 1.4e-54 216.9 176 61.4
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 1.9e-54 216.5 170 64.1
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 1.9e-54 216.5 174 62.6
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.9e-54 216.5 173 61.8
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.5e-54 216.1 174 62.1
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 3.2e-54 215.7 174 61.5
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.5e-54 214.9 173 63.0
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 5.5e-54 214.9 183 60.1
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 9.4e-54 214.2 172 63.4
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 9.4e-54 214.2 172 61.6
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 9.4e-54 214.2 173 59.5
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 9.4e-54 214.2 174 60.9
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 1.2e-53 213.8 173 61.3
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 1.2e-53 213.8 173 61.3
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.6e-53 213.4 171 62.6
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.6e-53 213.4 173 61.3
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 3.6e-53 212.2 178 57.9
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 4.7e-53 211.8 170 62.4
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 6.1e-53 211.5 166 63.9
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.1e-53 211.5 174 62.1
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 7.9e-53 211.1 169 60.4
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 1.4e-52 210.3 169 61.5
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 3.9e-52 208.8 173 59.5
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 6.7e-52 208.0 171 58.5
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 6.7e-52 208.0 174 59.2
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 6.7e-52 208.0 172 59.3
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 8.8e-52 207.6 171 59.6
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 8.8e-52 207.6 174 60.3
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 1.5e-51 206.8 161 64.0
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 2.6e-51 206.1 169 59.8
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 3.3e-51 205.7 169 59.2
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 3.3e-51 205.7 173 59.5
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 4.4e-51 205.3 173 61.3
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 5.7e-51 204.9 173 59.5
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 7.4e-51 204.5 178 56.7
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 7.4e-51 204.5 168 60.1
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.3e-50 203.8 173 58.4
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 1.3e-50 203.8 171 58.5
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 1.7e-50 203.4 169 59.8
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 2.8e-50 202.6 179 57.5
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 4.8e-50 201.8 176 58.5
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 4.8e-50 201.8 174 59.2
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 6.3e-50 201.4 182 56.6
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 8.2e-50 201.1 173 59.5
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 8.2e-50 201.1 176 57.4
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.8e-49 199.9 166 57.8
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 2.4e-49 199.5 165 62.4
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 2.4e-49 199.5 166 57.2
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 3.1e-49 199.1 166 57.8
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 5.3e-49 198.4 166 57.2
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 5.3e-49 198.4 166 54.8
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 9.1e-49 197.6 167 59.3
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 1.6e-48 196.8 170 57.6
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 2.6e-48 196.1 168 58.3
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 2.6e-48 196.1 169 59.2
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 2.6e-48 196.1 178 56.2
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 5.9e-48 194.9 168 58.9
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 1.0e-47 194.1 179 57.5
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.3e-47 193.7 168 58.3
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 2.2e-47 193.0 172 55.2
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 6.5e-47 191.4 168 57.1
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.1e-46 190.7 175 57.7
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 1.9e-46 189.9 174 55.2
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.8e-44 183.3 197 51.8
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.0e-44 182.2 197 52.3
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.4e-43 178.7 193 51.3
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 4.8e-42 175.3 166 53.6
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 4.1e-41 172.2 166 53.0
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 1.6e-37 160.2 184 47.8
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 4.7e-37 158.7 171 49.1
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 6.8e-36 154.8 111 64.9
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 1.2e-35 154.1 111 66.7
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 3.4e-35 152.5 163 50.3
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 9.1e-33 144.4 176 47.2
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 4.5e-32 142.1 115 61.7
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 5.9e-32 141.7 125 56.0
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 1.7e-31 140.2 107 61.7
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.2e-31 139.8 92 72.8
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 2.2e-31 139.8 157 49.7
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 3.8e-31 139.0 178 40.4
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 3.8e-31 139.0 136 55.1
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 5.0e-31 138.7 136 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 8.5e-31 137.9 177 40.7
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 9.5e-30 134.4 125 53.6
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 9.5e-30 134.4 120 55.0
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 1.6e-29 133.7 168 43.5
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 6.3e-26 121.7 112 57.1
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 6.6e-23 111.7 106 53.8
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 1.6e-21 107.1 109 55.0
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 6.8e-20 101.7 203 34.0
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 9.2e-17 91.3 63 61.9
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 1.2e-16 90.9 153 37.3
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 2.0e-16 90.1 63 58.7
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 1.5e-11 73.9 93 39.8
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 1.5e-11 73.9 93 39.8
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 1.2e-08 64.3 47 61.7
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.0e-08 63.5 64 50.0


User provided reference genes

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