Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 3.3e-75 285.8 262 100.0
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 3.7e-66 255.8 263 93.2
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 3.9e-23 112.8 74 91.9
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 8.6e-23 111.7 131 49.6
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 7.3e-22 108.6 101 57.4
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 9.6e-22 108.2 134 55.2
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 3.6e-21 106.3 138 47.1
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 8.1e-21 105.1 118 56.8
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 8.1e-21 105.1 99 68.7
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 6.8e-20 102.1 137 45.3
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 3.4e-19 99.8 105 51.4
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 7.6e-19 98.6 134 46.3
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 7.6e-19 98.6 117 47.9
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 1.7e-18 97.4 95 67.4
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 1.7e-18 97.4 112 56.2
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 2.2e-18 97.1 95 54.7
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 2.2e-18 97.1 111 46.8
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 2.9e-18 96.7 102 61.8
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 2.9e-18 96.7 132 46.2
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 6.4e-18 95.5 99 53.5
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 1.1e-17 94.7 97 53.6
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 2.4e-17 93.6 134 42.5
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 7.1e-17 92.0 118 44.1
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 2.1e-16 90.5 137 40.1
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 2.7e-16 90.1 132 51.5
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 2.7e-16 90.1 139 41.7
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 3.5e-16 89.7 108 48.1
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.3e-15 87.8 120 44.2
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.7e-15 87.4 108 46.3
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 1.7e-15 87.4 86 48.8
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.7e-15 87.4 86 48.8
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 1.7e-15 87.4 86 48.8
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 2.3e-15 87.0 85 47.1
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.9e-15 86.3 91 53.8
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 5.1e-15 85.9 83 50.6
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 5.1e-15 85.9 91 53.8
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 8.7e-15 85.1 123 44.7
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 1.1e-14 84.7 113 45.1
TAR381G0487 Trochodendron aralioides HOM05D003899 ORTHO05D003655 1.1e-14 84.7 89 50.6
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.9e-14 84.0 119 51.3
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 1.9e-14 84.0 79 58.2
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 2.5e-14 83.6 134 38.8
CiPaw.15G021500 Carya illinoinensis HOM05D003899 ORTHO05D003655 3.3e-14 83.2 73 54.8
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 5.6e-14 82.4 117 37.6
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 7.3e-14 82.0 91 45.1
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 7.3e-14 82.0 119 46.2
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 7.3e-14 82.0 72 54.2
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 2.1e-13 80.5 94 42.6
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 2.8e-13 80.1 94 43.6
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 3.6e-13 79.7 110 40.9
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 3.6e-13 79.7 110 40.9
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 8.1e-13 78.6 124 39.5
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 8.1e-13 78.6 121 38.8
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 8.1e-13 78.6 91 46.2
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 1.1e-12 78.2 133 38.3
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 1.1e-12 78.2 92 46.7
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.1e-12 78.2 119 37.0
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.4e-12 77.8 90 43.3
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.4e-12 77.8 90 43.3
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 1.4e-12 77.8 88 47.7
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 1.8e-12 77.4 93 41.9
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 2.4e-12 77.0 111 42.3
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 2.4e-12 77.0 89 57.3
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 2.4e-12 77.0 119 41.2
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 3.1e-12 76.6 91 42.9
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 3.1e-12 76.6 90 42.2
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 3.1e-12 76.6 122 50.0
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 3.1e-12 76.6 75 52.0
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 3.1e-12 76.6 94 40.4
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 9.0e-12 75.1 79 44.3
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.5e-11 74.3 93 43.0
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 2.0e-11 73.9 104 43.3
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 2.6e-11 73.6 91 40.7
QL02p025328 Quercus lobata HOM05D003899 ORTHO05D003655 2.6e-11 73.6 74 52.7
Dinv03732 Davidia involucrata HOM05D000043 ORTHO05D002577 3.4e-11 73.2 76 48.7
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 4.4e-11 72.8 101 50.5
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 7.6e-11 72.0 120 39.2
Dinv41123 Davidia involucrata HOM05D000043 ORTHO05D002577 9.9e-11 71.6 109 45.9
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.7e-10 70.9 127 36.2
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 1.7e-10 70.9 136 36.8
Hma1.2p1_0528F.1_g173010 Hydrangea macrophylla HOM05D003899 ORTHO05D003655 1.7e-10 70.9 67 50.7
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 1.7e-10 70.9 73 43.8
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 2.2e-10 70.5 85 47.1
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 2.2e-10 70.5 89 41.6
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 2.9e-10 70.1 91 41.8
TWI79G1413 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 2.9e-10 70.1 58 53.4
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 3.8e-10 69.7 97 40.2
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 3.8e-10 69.7 74 54.1
Phvul.001G073300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 8.4e-10 68.6 56 51.8
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 1.1e-09 68.2 102 52.9
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.1e-09 68.2 108 38.0
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.1e-09 68.2 86 44.2
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.4e-09 67.8 102 40.2
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.9e-09 67.4 62 48.4
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.4e-09 67.0 91 39.6
Lalb_Chr23g0271351 Lupinus albus HOM05D003899 ORTHO05D003655 2.4e-09 67.0 100 48.0
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 2.4e-09 67.0 74 48.6
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 3.2e-09 66.6 82 45.1
Phvul.001G052300 Phaseolus vulgaris HOM05D003899 ORTHO05D003655 3.2e-09 66.6 72 43.1
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 4.2e-09 66.2 116 40.5
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 4.2e-09 66.2 59 54.2
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 5.4e-09 65.9 82 45.1
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 5.4e-09 65.9 121 33.9
Glyma.14G122000 Glycine max HOM05D003899 ORTHO05D003655 7.1e-09 65.5 62 51.6
CANSAT11G1227 Cannabis sativa HOM05D003899 ORTHO05D003655 9.3e-09 65.1 90 42.2
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 1.2e-08 64.7 94 37.2
Sabra07G0088500 Salix brachista HOM05D000850 ORTHO05D000266 1.6e-08 64.3 90 42.2
Cpa.g.sc49.66 Carica papaya HOM05D003899 ORTHO05D003655 2.1e-08 63.9 74 39.2
Duzib093G1486 Durio zibethinus HOM05D009119 ORTHO05D003655 2.1e-08 63.9 85 50.6
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 2.1e-08 63.9 77 40.3
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 2.7e-08 63.5 89 39.3
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 2.7e-08 63.5 108 36.1
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 3.5e-08 63.2 91 41.8
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 4.6e-08 62.8 74 43.2
DCAR_001362 Daucus carota HOM05D003899 ORTHO05D003655 4.6e-08 62.8 78 43.6
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 4.6e-08 62.8 73 47.9
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 4.6e-08 62.8 90 37.8
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 4.6e-08 62.8 88 38.6
TPR.G33315 Trifolium pratense HOM05D003899 ORTHO05D003655 6.0e-08 62.4 91 41.8
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 1.0e-07 61.6 121 36.4
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 1.0e-07 61.6 59 49.2
VMungo0647G2071 Vigna mungo HOM05D003899 ORTHO05D003655 1.0e-07 61.6 61 41.0
THA.LOC104827412 Tarenaya hassleriana HOM05D009119 ORTHO05D003655 2.3e-07 60.5 95 42.1
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.0e-07 60.1 109 35.8
Os08g0108300 Oryza sativa ssp. japonica HOM05D053309 ORTHO05D003655 3.0e-07 60.1 107 36.4
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 3.9e-07 59.7 108 37.0
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 3.9e-07 59.7 90 40.0
Nitab4.5_0008388g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 3.9e-07 59.7 91 40.7
COL.COLO4_11973 Corchorus olitorius HOM05D009119 ORTHO05D003655 5.1e-07 59.3 84 44.0
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 5.1e-07 59.3 82 37.8
Sopen07g030130 Solanum pennellii HOM05D003899 ORTHO05D003655 5.1e-07 59.3 52 53.8
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 6.6e-07 58.9 99 38.4
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 6.6e-07 58.9 91 39.6
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 8.7e-07 58.5 108 37.0
Thecc.08G065300 Theobroma cacao HOM05D009119 ORTHO05D003655 1.1e-06 58.2 109 37.6
C07p00500 Brassica napus HOM05D003899 ORTHO05D003655 1.5e-06 57.8 64 42.2
CSS0000461 Camellia sinensis var. sinensis HOM05D003899 ORTHO05D003655 1.9e-06 57.4 80 42.5
Migut.M00600 Erythranthe guttata HOM05D003899 ORTHO05D003655 1.9e-06 57.4 80 38.8
Lj2C604T4 Lonicera japonica HOM05D003899 ORTHO05D003655 1.9e-06 57.4 89 33.7
ECA238G1798 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.5e-06 57.0 73 43.8
Nitab4.5_0001140g0230 Nicotiana tabacum HOM05D003899 ORTHO05D003655 2.5e-06 57.0 91 39.6
PGSC0003DMG400001039 Solanum tuberosum HOM05D003899 ORTHO05D003655 3.3e-06 56.6 52 50.0
Haze_22364 Corylus avellana HOM05D009119 ORTHO05D003655 4.3e-06 56.2 99 37.4
Carub.0001s4477 Capsella rubella HOM05D003899 ORTHO05D003655 5.6e-06 55.8 95 37.9
BcaC06g36741 Brassica carinata HOM05D003899 ORTHO05D003655 9.6e-06 55.1 64 40.6
BolC7t40496H Brassica oleracea HOM05D003899 ORTHO05D003655 9.6e-06 55.1 64 40.6
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 9.6e-06 55.1 89 32.6


User provided reference genes

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