Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.5e-104 382.9 202 100.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 3.9e-100 368.2 201 97.0
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.0e-76 290.4 201 76.1
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 3.4e-75 285.4 208 71.2
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.3e-74 283.5 208 70.2
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.2e-73 278.9 202 72.3
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.2e-73 278.9 202 72.3
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 7.0e-73 277.7 204 72.5
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.7e-72 275.8 181 74.6
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.7e-72 275.8 208 67.8
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 5.9e-72 274.6 207 68.6
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 7.8e-72 274.2 205 70.2
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.3e-71 273.5 203 68.0
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.7e-71 273.1 208 68.3
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.3e-71 272.7 207 68.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.9e-71 272.3 207 69.1
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.1e-70 270.4 199 70.9
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.1e-70 270.4 198 70.7
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 3.3e-70 268.9 190 71.1
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.3e-70 268.9 186 72.6
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 3.3e-70 268.9 202 68.8
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.3e-70 268.9 196 69.9
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.3e-70 268.5 191 71.2
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 4.3e-70 268.5 205 68.3
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.6e-70 268.1 203 68.5
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 5.6e-70 268.1 192 70.8
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 5.6e-70 268.1 191 71.2
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 5.6e-70 268.1 204 68.1
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 5.6e-70 268.1 202 68.3
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 9.5e-70 267.3 203 68.5
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 9.5e-70 267.3 197 69.5
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.2e-69 266.9 172 76.7
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.6e-69 266.5 209 66.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.6e-69 266.5 208 67.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.6e-69 266.5 196 70.4
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.8e-69 265.8 197 69.5
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.6e-69 265.4 192 69.8
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.6e-69 265.4 203 68.0
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 3.6e-69 265.4 171 76.0
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 4.7e-69 265.0 196 67.9
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 6.1e-69 264.6 172 75.0
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 6.1e-69 264.6 192 70.8
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.1e-69 264.6 191 70.2
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 6.1e-69 264.6 197 69.0
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 8.0e-69 264.2 197 68.0
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.0e-68 263.8 196 70.9
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.0e-68 263.8 198 71.7
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.4e-68 263.5 202 66.3
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.8e-68 263.1 203 67.5
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.8e-68 263.1 204 69.6
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.8e-68 263.1 198 69.2
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 2.3e-68 262.7 202 67.3
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 3.1e-68 262.3 172 74.4
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 3.1e-68 262.3 201 67.7
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.1e-68 262.3 197 69.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 3.1e-68 262.3 197 68.0
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.1e-68 262.3 187 70.6
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 4.0e-68 261.9 202 68.8
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 5.2e-68 261.5 209 67.0
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 5.2e-68 261.5 196 67.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 5.2e-68 261.5 192 69.8
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 6.8e-68 261.2 192 70.3
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.9e-68 260.8 190 70.5
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.2e-67 260.4 189 69.8
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.2e-67 260.4 196 69.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.4e-67 258.5 197 68.0
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.4e-67 258.5 204 67.6
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 5.8e-67 258.1 202 66.3
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 7.5e-67 257.7 172 73.8
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 7.5e-67 257.7 202 66.8
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 7.5e-67 257.7 206 66.0
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 9.8e-67 257.3 199 66.3
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.7e-66 256.5 192 68.8
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.7e-66 256.5 210 65.7
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 3.7e-66 255.4 199 66.3
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.1e-65 253.8 184 69.6
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.9e-65 253.1 207 67.1
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 4.1e-65 251.9 197 67.0
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 3.5e-64 248.8 205 61.0
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.0e-64 248.1 199 63.3
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 7.8e-64 247.7 189 68.3
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-63 247.3 156 78.2
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.3e-63 246.1 193 65.8
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.3e-63 246.1 193 65.8
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 3.9e-63 245.4 194 66.5
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 6.6e-63 244.6 206 65.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.1e-62 243.8 192 65.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.1e-62 243.8 189 65.6
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.1e-62 243.8 189 67.2
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.9e-62 243.0 203 65.0
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.5e-62 242.7 207 62.8
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.3e-62 242.3 192 64.1
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 5.6e-62 241.5 153 76.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 5.6e-62 241.5 287 51.2
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.6e-62 241.5 165 71.5
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 7.3e-62 241.1 177 70.1
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 9.5e-62 240.7 193 64.8
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 9.5e-62 240.7 206 64.1
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.1e-61 239.6 219 62.6
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.8e-61 239.2 203 62.6
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.8e-61 239.2 174 70.7
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 3.6e-61 238.8 200 62.5
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 3.6e-61 238.8 190 62.6
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.7e-61 238.4 189 64.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 8.0e-61 237.7 206 62.6
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.4e-60 236.9 193 62.7
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.8e-60 236.5 188 67.0
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.3e-60 236.1 203 64.0
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.1e-60 235.7 193 63.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 4.0e-60 235.3 172 70.9
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 6.8e-60 234.6 204 61.8
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 8.9e-60 234.2 199 62.8
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.2e-59 233.8 190 63.7
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-59 233.8 200 63.0
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.0e-59 233.0 199 62.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 9.8e-59 230.7 201 61.2
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.7e-58 229.9 209 61.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.7e-58 229.9 154 73.4
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.6e-55 218.0 200 61.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.6e-55 218.0 162 68.5
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 8.6e-55 217.6 169 68.6
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.6e-54 214.9 202 58.4
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 4.1e-49 198.7 125 80.0
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 4.6e-48 195.3 190 56.8
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.9e-46 189.9 198 57.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 4.3e-46 188.7 120 77.5
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 7.3e-46 188.0 167 56.3
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 6.2e-45 184.9 120 74.2
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.2e-44 181.8 120 75.0
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 4.4e-43 178.7 168 56.0
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 9.9e-43 177.6 110 79.1
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.7e-40 169.5 142 57.7
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 3.5e-40 169.1 198 51.0
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.3e-39 166.4 96 82.3
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.0e-39 166.0 149 62.4
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 3.3e-38 162.5 107 75.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.0e-36 155.6 180 48.3
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 8.4e-34 147.9 99 76.8
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.2e-32 144.1 167 44.3
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.5e-32 142.5 197 44.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.7e-31 140.2 141 49.6
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.7e-31 140.2 112 62.5
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.2e-29 131.7 172 47.1
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 4.5e-19 99.0 98 55.1
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.5e-17 93.2 174 35.1
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 2.5e-17 93.2 65 63.1
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 2.5e-17 93.2 55 70.9
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 2.1e-16 90.1 67 65.7
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.7e-16 89.7 70 61.4
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.1e-12 77.8 176 33.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 3.1e-12 76.3 55 70.9
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.0e-12 74.7 84 54.8
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-11 74.3 47 74.5
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 4.5e-11 72.4 40 87.5
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.2e-08 64.3 93 41.9
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 3.0e-07 59.7 37 70.3


User provided reference genes

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