Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 5.3e-66 254.2 128 100.0
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 5.1e-53 211.1 115 93.9
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 2.8e-19 99.0 81 56.8
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 2.8e-19 99.0 81 56.8
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 1.1e-18 97.1 90 53.3
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 3.1e-18 95.5 82 57.3
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 3.1e-18 95.5 90 52.2
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.2e-17 93.6 75 60.0
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.6e-17 93.2 98 54.1
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 2.0e-17 92.8 76 60.5
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 2.0e-17 92.8 81 58.0
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 3.5e-17 92.0 77 62.3
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 5.9e-17 91.3 79 59.5
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 5.9e-17 91.3 79 58.2
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 1.0e-16 90.5 82 54.9
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 1.0e-16 90.5 75 61.3
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 1.0e-16 90.5 90 54.4
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.7e-16 89.7 75 57.3
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 2.2e-16 89.4 83 54.2
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.2e-16 89.4 79 55.7
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.9e-16 89.0 77 59.7
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 2.9e-16 89.0 74 58.1
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 3.8e-16 88.6 78 56.4
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 5.0e-16 88.2 125 47.2
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.0e-16 88.2 87 55.2
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 5.0e-16 88.2 83 56.6
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 6.5e-16 87.8 82 53.7
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 8.5e-16 87.4 76 57.9
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.1e-15 87.0 87 54.0
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 1.1e-15 87.0 76 57.9
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 1.5e-15 86.7 77 53.2
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.5e-15 86.7 87 54.0
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.5e-15 86.7 77 54.5
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 1.5e-15 86.7 91 53.8
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 1.9e-15 86.3 86 53.5
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 1.9e-15 86.3 75 56.0
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 1.9e-15 86.3 82 52.4
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.5e-15 85.9 91 52.7
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 2.5e-15 85.9 75 57.3
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 3.2e-15 85.5 113 46.0
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 3.2e-15 85.5 75 57.3
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 3.2e-15 85.5 86 51.2
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 4.2e-15 85.1 86 50.0
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 4.2e-15 85.1 110 48.2
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 4.2e-15 85.1 82 54.9
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 5.5e-15 84.7 90 51.1
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 5.5e-15 84.7 75 54.7
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 5.5e-15 84.7 77 54.5
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 5.5e-15 84.7 75 57.3
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 7.2e-15 84.3 75 57.3
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 7.2e-15 84.3 91 52.7
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 7.2e-15 84.3 75 50.7
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 9.4e-15 84.0 110 42.7
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 9.4e-15 84.0 75 57.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 9.4e-15 84.0 75 57.3
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 9.4e-15 84.0 75 57.3
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 1.2e-14 83.6 103 45.6
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 1.6e-14 83.2 75 54.7
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 1.6e-14 83.2 77 57.1
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.6e-14 83.2 79 54.4
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 2.1e-14 82.8 75 54.7
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 2.1e-14 82.8 75 57.3
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.1e-14 82.8 81 54.3
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 2.7e-14 82.4 75 54.7
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 3.6e-14 82.0 87 52.9
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 4.7e-14 81.6 96 46.9
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 4.7e-14 81.6 87 49.4
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 6.1e-14 81.3 75 53.3
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 6.1e-14 81.3 82 56.1
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 6.1e-14 81.3 72 56.9
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 8.0e-14 80.9 76 51.3
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 1.8e-13 79.7 88 46.6
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 1.8e-13 79.7 119 43.7
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 1.8e-13 79.7 86 48.8
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.8e-13 79.7 91 46.2
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.3e-13 79.3 75 56.0
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 2.3e-13 79.3 80 52.5
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.3e-13 79.3 80 50.0
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.3e-13 79.3 75 57.3
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 4.0e-13 78.6 103 45.6
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 6.8e-13 77.8 75 54.7
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.2e-12 77.0 74 51.4
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 1.2e-12 77.0 114 41.2
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 1.5e-12 76.6 74 52.7
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 1.5e-12 76.6 74 51.4
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.5e-12 76.6 75 53.3
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.0e-12 76.3 89 47.2
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 2.0e-12 76.3 78 51.3
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.6e-12 75.9 74 51.4
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.6e-12 75.9 74 50.0
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 2.6e-12 75.9 74 52.7
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 2.6e-12 75.9 83 50.6
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 3.4e-12 75.5 75 49.3
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 3.4e-12 75.5 74 51.4
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 3.4e-12 75.5 77 50.6
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 4.4e-12 75.1 75 48.0
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.4e-12 75.1 74 50.0
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 4.4e-12 75.1 77 49.4
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 4.4e-12 75.1 74 51.4
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 5.7e-12 74.7 80 53.8
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 5.7e-12 74.7 78 50.0
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 7.5e-12 74.3 75 49.3
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 9.8e-12 73.9 77 53.2
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 1.3e-11 73.6 74 51.4
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 1.3e-11 73.6 74 51.4
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 1.3e-11 73.6 74 51.4
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.3e-11 73.6 74 51.4
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 1.3e-11 73.6 74 51.4
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 1.3e-11 73.6 74 51.4
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 1.3e-11 73.6 78 47.4
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.3e-11 73.6 75 52.0
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 1.7e-11 73.2 75 52.0
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 1.7e-11 73.2 79 48.1
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.2e-11 72.8 74 45.9
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.2e-11 72.8 76 52.6
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 2.2e-11 72.8 74 48.6
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 2.8e-11 72.4 79 50.6
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.7e-11 72.0 76 53.9
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 3.7e-11 72.0 75 50.7
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 6.3e-11 71.2 74 50.0
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 8.3e-11 70.9 77 48.1
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.1e-10 70.5 75 49.3
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 1.1e-10 70.5 77 45.5
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 1.1e-10 70.5 75 49.3
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.4e-10 70.1 70 54.3
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.4e-10 70.1 90 45.6
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 2.4e-10 69.3 75 48.0
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.4e-10 69.3 75 48.0
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.4e-10 69.3 75 48.0
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 3.1e-10 68.9 82 48.8
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 3.1e-10 68.9 93 40.9
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 4.1e-10 68.6 71 52.1
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 4.1e-10 68.6 77 42.9
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.1e-10 68.6 77 42.9
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 5.4e-10 68.2 49 59.2
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 7.0e-10 67.8 79 44.3
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 7.0e-10 67.8 79 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 9.1e-10 67.4 80 45.0
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 9.1e-10 67.4 74 47.3
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 9.1e-10 67.4 74 45.9
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 9.1e-10 67.4 74 47.3
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 9.1e-10 67.4 74 47.3
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 9.1e-10 67.4 74 47.3
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.2e-09 67.0 77 41.6
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.6e-09 66.6 104 38.5
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 1.6e-09 66.6 74 45.9
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 1.6e-09 66.6 66 54.5
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 1.6e-09 66.6 83 42.2
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 2.0e-09 66.2 128 35.9
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 3.5e-09 65.5 75 49.3
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.9e-09 64.7 66 53.0
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 7.7e-09 64.3 74 45.9
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 1.0e-08 63.9 77 42.9
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.3e-08 63.5 77 42.9
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 2.2e-08 62.8 75 45.3
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 2.9e-08 62.4 87 37.9
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 8.5e-08 60.8 78 46.2
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 2.5e-07 59.3 75 46.7
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 3.2e-07 58.9 75 46.7
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 4.2e-07 58.5 44 59.1
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 4.2e-07 58.5 106 37.7
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.2e-06 57.0 46 56.5
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.2e-06 57.0 103 35.9
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 3.6e-06 55.5 69 37.7
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 4.7e-06 55.1 64 46.9
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 6.1e-06 54.7 45 53.3
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 8.0e-06 54.3 49 44.9


User provided reference genes

Program Settings