Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 0.0e+00 1375.1 730 100.0
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 0.0e+00 1268.8 729 92.6
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 5.8e-109 399.4 753 41.7
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.5e-104 384.0 810 39.1
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.6e-101 374.0 770 39.4
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.1e-94 352.1 846 36.2
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.2e-91 340.5 775 37.5
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.6e-90 338.2 740 39.2
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 3.3e-88 330.5 762 38.3
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.3e-88 329.3 723 39.6
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 3.4e-85 320.5 717 37.0
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.3e-84 318.5 756 36.6
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 8.4e-84 315.8 718 38.6
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.4e-83 315.1 731 36.3
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 4.2e-83 313.5 766 37.6
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 6.7e-81 306.2 751 36.0
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 1.1e-78 298.9 740 36.4
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.4e-78 298.5 723 37.3
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.4e-78 298.5 727 37.4
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.4e-78 298.5 732 36.1
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.5e-77 295.0 736 35.3
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 2.6e-77 294.3 715 37.2
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.6e-77 294.3 715 37.2
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.0e-76 292.4 756 35.3
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.7e-76 291.6 771 34.9
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 3.2e-75 287.3 681 37.6
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 9.3e-75 285.8 696 36.6
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.2e-74 285.4 733 34.4
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 2.1e-74 284.6 748 36.0
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 3.5e-74 283.9 600 38.7
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 7.4e-72 276.2 768 35.0
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 3.4e-69 267.3 705 35.0
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 5.8e-69 266.5 712 33.6
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.7e-68 265.0 725 34.3
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 8.4e-68 262.7 759 33.9
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 1.4e-67 261.9 729 35.0
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 4.2e-67 260.4 533 38.1
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 5.5e-67 260.0 746 33.9
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 9.3e-67 259.2 727 34.7
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.3e-67 259.2 221 61.5
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.6e-66 258.5 719 35.2
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.6e-66 258.5 727 35.6
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 2.1e-66 258.1 732 35.0
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.1e-66 258.1 721 34.1
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 3.5e-66 257.3 686 36.4
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 4.6e-66 256.9 736 34.4
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.3e-65 255.4 725 34.8
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.9e-64 251.5 713 33.2
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 4.3e-64 250.4 715 32.9
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.3e-63 248.8 722 34.6
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.6e-63 248.4 714 32.9
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 2.8e-63 247.7 505 39.2
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 4.8e-63 246.9 725 34.5
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.1e-62 245.7 714 33.2
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 5.9e-61 240.0 511 37.8
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.0e-60 239.2 744 31.3
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.3e-60 238.8 726 32.5
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.5e-60 236.1 646 37.0
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 1.1e-59 235.7 713 31.8
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 3.2e-59 234.2 729 33.9
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 5.5e-59 233.4 672 34.7
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 1.6e-58 231.9 692 35.7
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 4.6e-58 230.3 747 33.2
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 1.8e-57 228.4 754 32.9
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.1e-56 225.7 559 36.1
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.1e-56 225.7 760 32.6
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 2.5e-56 224.6 593 35.2
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.7e-55 221.9 716 32.0
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 2.8e-55 221.1 513 35.9
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.8e-54 218.4 640 34.1
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.5e-53 213.8 714 31.9
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 5.0e-52 210.3 737 30.5
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 8.5e-52 209.5 829 29.8
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.4e-51 208.8 297 45.1
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.4e-51 208.8 611 33.7
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 1.6e-50 205.3 732 30.7
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 4.7e-50 203.8 548 34.1
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 3.0e-49 201.1 745 31.4
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.9e-49 200.7 571 34.9
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 5.1e-49 200.3 751 30.8
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 8.8e-49 199.5 720 31.8
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 8.8e-49 199.5 472 34.5
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 2.6e-48 198.0 661 32.2
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 2.6e-48 198.0 200 55.5
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 8.2e-47 193.0 711 30.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.5e-45 188.7 832 29.1
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 5.9e-45 186.8 719 30.2
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 5.9e-45 186.8 641 32.9
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.7e-44 185.3 548 33.6
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 3.8e-44 184.1 712 29.8
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 6.5e-44 183.3 799 30.7
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.1e-43 182.6 744 30.4
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.6e-42 178.7 754 29.3
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 8.0e-42 176.4 714 29.7
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.4e-41 175.6 727 29.6
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.4e-41 175.6 724 29.4
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 2.3e-41 174.9 761 29.4
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 3.0e-41 174.5 718 27.4
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 6.7e-41 173.3 832 28.2
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.1e-40 172.6 728 28.7
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.0e-40 171.8 710 29.3
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 4.4e-40 170.6 728 28.6
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 3.7e-39 167.5 734 29.3
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.6e-37 162.2 507 32.7
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 2.0e-37 161.8 569 31.8
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 5.9e-37 160.2 720 28.6
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 4.2e-35 154.1 493 32.7
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 7.2e-35 153.3 705 28.1
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.5e-32 145.6 340 35.0
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 2.0e-32 145.2 702 27.9
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 7.0e-30 136.7 550 28.9
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.9e-28 131.3 645 29.3
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.9e-27 128.6 770 27.7
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.4e-25 122.5 603 29.4
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.8e-25 122.1 518 29.3
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.7e-23 115.5 421 32.8
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.9e-20 104.8 143 44.1
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 9.5e-19 99.8 73 61.6
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 2.8e-18 98.2 76 60.5
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.0e-17 94.7 401 30.2
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 4.4e-16 90.9 114 53.5
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 3.7e-15 87.8 482 28.2
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 7.0e-14 83.6 134 43.3
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-13 82.4 362 31.5
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 3.9e-12 77.8 73 56.2
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 5.6e-11 73.9 93 46.2
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 6.4e-07 60.5 40 65.0
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 5.4e-06 57.4 41 65.9
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 9.2e-06 56.6 160 34.4


User provided reference genes

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