Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 3.0e-99 365.2 183 100.0
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 3.0e-99 365.2 183 100.0
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 83.4
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 7.0e-80 300.8 182 84.6
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.6e-79 299.7 182 84.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 2.0e-79 299.3 183 83.1
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 2.0e-79 299.3 183 82.5
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.0e-79 299.3 180 85.6
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.5e-79 298.1 182 83.0
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 4.5e-79 298.1 183 82.0
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.8e-79 297.4 181 81.8
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.8e-79 297.4 181 81.8
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.0e-78 297.0 183 81.4
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.3e-78 296.6 183 82.5
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 2.3e-78 295.8 182 83.5
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 3.8e-78 295.0 182 81.9
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 3.8e-78 295.0 182 81.9
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.8e-78 295.0 182 81.3
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.6e-78 294.3 182 81.9
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.9e-77 292.7 182 81.9
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.9e-77 292.7 183 81.4
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.9e-77 292.7 181 83.4
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.5e-77 292.4 183 81.4
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 4.3e-77 291.6 182 80.8
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 4.3e-77 291.6 182 81.9
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 5.6e-77 291.2 182 81.3
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 7.3e-77 290.8 182 80.8
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 7.3e-77 290.8 182 80.8
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.2e-76 290.0 182 79.7
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.2e-76 290.0 182 82.4
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.2e-76 290.0 183 80.3
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.2e-76 290.0 183 80.9
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.6e-76 289.7 182 79.1
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 2.1e-76 289.3 182 81.3
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.6e-76 288.5 183 79.8
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.7e-76 288.1 181 80.1
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 4.7e-76 288.1 182 80.8
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 4.7e-76 288.1 179 82.1
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.0e-76 287.3 183 78.7
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 8.0e-76 287.3 182 79.1
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 8.0e-76 287.3 183 80.3
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.4e-75 286.6 182 79.7
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.4e-75 286.6 182 79.7
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.8e-75 286.2 182 79.1
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 1.8e-75 286.2 179 81.6
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.8e-75 286.2 179 81.6
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 2.3e-75 285.8 184 77.2
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 3.0e-75 285.4 179 81.0
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.0e-75 285.4 179 81.0
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 4.0e-75 285.0 183 79.8
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 4.0e-75 285.0 182 79.1
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 4.0e-75 285.0 203 74.4
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.2e-75 284.6 183 76.0
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 8.9e-75 283.9 179 81.0
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.2e-74 283.5 183 75.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.5e-74 283.1 182 78.6
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.5e-74 283.1 182 81.3
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-74 282.7 183 78.7
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 3.4e-74 282.0 179 79.9
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 4.4e-74 281.6 183 78.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 4.4e-74 281.6 182 76.4
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 7.5e-74 280.8 183 77.0
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 9.8e-74 280.4 177 79.7
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.3e-73 280.0 181 77.3
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 2.2e-73 279.3 183 77.0
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 2.9e-73 278.9 183 76.5
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 2.9e-73 278.9 180 80.0
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.9e-73 278.9 181 77.3
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.9e-73 278.9 183 76.5
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.9e-73 278.1 175 80.6
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 4.9e-73 278.1 183 77.0
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 4.9e-73 278.1 183 77.0
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 6.4e-73 277.7 183 77.0
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 8.3e-73 277.3 173 79.8
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 8.3e-73 277.3 171 83.6
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.1e-72 276.9 175 80.0
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.1e-72 276.9 185 75.1
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.1e-72 276.9 183 77.0
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.8e-72 276.2 178 77.5
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.8e-72 276.2 182 75.8
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.8e-72 276.2 173 79.2
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.8e-72 276.2 181 76.8
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 3.2e-72 275.4 184 76.6
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 5.4e-72 274.6 183 76.0
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 5.4e-72 274.6 170 83.5
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 7.0e-72 274.2 179 76.5
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 7.0e-72 274.2 183 76.5
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 9.2e-72 273.9 179 78.8
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.2e-71 273.5 183 76.0
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.6e-71 273.1 183 74.9
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 2.0e-71 272.7 183 74.9
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-71 271.9 183 75.4
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 3.5e-71 271.9 181 75.1
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 3.5e-71 271.9 183 74.9
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 3.5e-71 271.9 183 74.9
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.6e-71 271.6 172 80.8
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 6.0e-71 271.2 183 75.4
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 6.0e-71 271.2 183 75.4
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.0e-70 270.4 183 73.8
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.7e-70 269.6 182 71.4
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.7e-70 269.6 170 80.0
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.3e-70 269.2 172 79.7
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 3.0e-70 268.9 179 73.7
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.9e-70 268.5 175 78.3
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 5.0e-70 268.1 169 81.7
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-69 266.9 172 77.3
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-69 266.5 184 73.9
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.9e-69 266.2 184 73.9
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-69 266.2 184 73.9
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.9e-69 266.2 184 73.9
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.5e-69 265.8 172 78.5
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.5e-69 265.8 173 78.0
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 3.3e-69 265.4 180 76.7
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 5.6e-69 264.6 184 73.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 9.5e-69 263.8 181 73.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.2e-68 263.5 184 73.4
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.8e-68 262.3 183 72.7
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.4e-67 260.0 227 64.8
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.8e-67 259.6 171 76.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 8.9e-67 257.3 180 76.1
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 5.8e-66 254.6 180 69.4
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.8e-66 253.8 163 79.8
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 2.9e-65 252.3 171 75.4
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 8.3e-65 250.8 171 74.3
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.1e-64 250.4 171 75.4
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 4.1e-64 248.4 172 74.4
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.3e-62 243.4 173 69.4
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 5.6e-61 238.0 171 66.7
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.8e-60 235.7 260 53.8
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 4.7e-60 235.0 180 65.0
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 6.2e-60 234.6 152 80.3
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 6.8e-59 231.1 149 77.2
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.3e-57 226.9 177 62.7
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.2e-56 222.2 181 67.4
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 9.9e-50 200.7 175 57.1
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 5.4e-48 194.9 134 73.9
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 3.0e-46 189.1 173 60.1
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.7e-38 163.3 114 71.9
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.0e-35 151.0 133 63.2
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 2.6e-34 149.4 102 78.4
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.2e-33 146.4 80 88.8
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 3.5e-31 139.0 172 41.9
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.4e-29 131.3 67 92.5
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 5.3e-27 125.2 182 38.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 9.6e-21 104.4 100 56.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.8e-20 102.1 54 88.9
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 8.2e-20 101.3 57 82.5
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 5.3e-19 98.6 51 92.2
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 2.6e-18 96.3 78 66.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.6e-18 96.3 78 66.7
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.9e-17 92.8 165 34.5
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 6.5e-17 91.7 55 80.0
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 3.5e-15 85.9 172 32.0
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.6e-12 77.0 89 48.3
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 9.0e-11 71.2 37 89.2
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 3.4e-10 69.3 51 68.6
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 4.5e-10 68.9 87 47.1
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 5.9e-10 68.6 45 71.1
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 7.7e-10 68.2 65 56.9
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.4e-08 63.9 49 65.3
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 1.9e-08 63.5 38 81.6
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.9e-08 63.5 35 80.0
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.6e-07 60.5 42 66.7
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.6e-07 60.5 46 67.4


User provided reference genes

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