Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 0.0e+00 1697.6 912 100.0
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 0.0e+00 1629.0 912 96.5
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 0.0e+00 1104.7 935 65.5
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 6.0e-305 1050.8 936 62.3
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 1.4e-301 1039.6 909 62.6
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 1.5e-287 993.0 938 58.5
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 1.8e-285 986.1 893 60.7
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 1.3e-283 979.9 936 59.0
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 1.7e-280 969.5 869 62.0
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 2.3e-280 969.1 965 56.9
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 5.6e-279 964.5 908 58.6
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 7.3e-279 964.1 843 61.3
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 4.0e-277 958.4 942 58.3
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 5.3e-277 958.0 836 64.0
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 9.9e-276 953.7 889 58.0
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 4.9e-275 951.4 901 57.8
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 8.4e-275 950.7 911 58.6
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 4.2e-274 948.3 891 58.4
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 1.6e-273 946.4 876 58.9
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.1e-273 946.0 918 58.7
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 3.5e-273 945.3 942 56.7
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 6.0e-273 944.5 911 58.0
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 2.3e-272 942.6 895 58.1
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 3.0e-272 942.2 899 57.8
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 7.4e-271 937.6 911 57.5
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 7.4e-271 937.6 934 57.0
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 1.6e-270 936.4 893 58.2
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.8e-270 935.6 914 57.7
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.4e-269 932.6 915 57.4
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 3.4e-268 928.7 925 56.0
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 3.4e-268 928.7 911 57.5
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 1.3e-267 926.8 855 59.6
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 3.8e-267 925.2 904 56.5
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 8.4e-267 924.1 912 56.0
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 1.9e-266 922.9 938 56.1
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 3.5e-265 918.7 892 56.2
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 3.0e-264 915.6 888 56.9
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 3.0e-264 915.6 876 56.8
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 3.9e-264 915.2 881 56.4
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 8.7e-264 914.1 858 57.9
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 8.2e-262 907.5 872 56.4
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 3.1e-261 905.6 871 56.6
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 6.9e-261 904.4 875 56.7
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 1.2e-260 903.7 903 55.8
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 1.1e-258 897.1 902 54.8
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 1.1e-258 897.1 870 56.4
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 4.2e-258 895.2 887 56.1
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 9.3e-258 894.0 908 55.4
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.2e-257 893.6 883 55.0
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.6e-257 893.3 928 54.5
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 7.9e-257 891.0 905 55.5
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 7.9e-257 891.0 915 54.3
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.8e-256 889.8 891 54.2
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 8.7e-256 887.5 918 55.6
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.1e-255 887.1 883 56.3
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.1e-255 887.1 872 57.5
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 1.9e-255 886.3 886 55.1
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 2.5e-255 885.9 899 54.4
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 9.7e-255 884.0 906 55.3
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.8e-253 879.8 911 55.4
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 2.4e-253 879.4 891 53.5
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 3.1e-253 879.0 892 54.4
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 3.1e-253 879.0 931 52.7
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 4.1e-253 878.6 886 54.3
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.2e-252 877.1 937 52.4
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 1.5e-252 876.7 890 53.8
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 1.5e-252 876.7 890 53.8
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 2.0e-252 876.3 866 54.7
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 3.4e-252 875.5 873 55.9
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 3.4e-252 875.5 883 55.2
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 1.0e-251 874.0 861 56.4
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 2.2e-251 872.8 861 55.1
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 6.5e-251 871.3 886 55.0
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 8.5e-251 870.9 875 55.4
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.9e-250 869.8 884 54.2
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 6.1e-249 864.8 888 53.4
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 2.8e-246 855.9 883 54.9
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 8.2e-246 854.4 939 51.2
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 7.7e-244 847.8 785 59.0
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.7e-243 846.7 848 54.2
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 7.2e-242 841.3 886 53.4
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 1.1e-239 833.9 865 53.4
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 9.1e-237 824.3 915 52.5
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 7.7e-236 821.2 889 51.6
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 5.9e-228 795.0 760 56.7
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 4.2e-226 788.9 874 52.1
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 7.5e-223 778.1 731 56.2
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 4.2e-218 762.3 744 56.7
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.7e-217 759.6 909 47.5
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 3.6e-217 759.2 781 53.5
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 4.7e-217 758.8 663 61.8
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.0e-216 757.7 753 54.6
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 1.0e-208 731.1 847 50.3
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.9e-206 722.2 890 46.7
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 1.1e-194 684.5 652 56.6
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.2e-185 654.4 876 42.9
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 5.2e-184 649.0 866 43.8
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 7.6e-183 645.2 881 44.3
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 4.1e-181 639.4 873 42.4
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 8.6e-179 631.7 639 54.0
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 6.8e-176 622.1 530 61.1
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 2.4e-173 613.6 530 61.1
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 2.1e-156 557.4 707 48.5
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 6.0e-148 529.3 861 38.8
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 5.7e-146 522.7 477 58.3
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 1.8e-139 501.1 797 41.5
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.0e-118 432.2 472 53.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 5.0e-110 403.3 891 32.0
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 7.5e-106 389.4 943 33.4
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 9.5e-101 372.5 427 51.8
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.3e-93 347.4 408 50.7
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 8.9e-91 339.3 934 28.3
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 7.5e-90 336.3 1009 26.7
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.3e-89 332.8 349 50.4
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 1.1e-80 305.8 310 54.2
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.5e-79 300.8 456 43.2
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 3.6e-76 290.8 289 54.0
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.0e-70 272.7 324 50.3
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 5.1e-70 270.4 275 52.4
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.3e-65 255.8 455 42.4
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.5e-61 242.3 256 52.0
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 3.0e-54 218.0 196 61.2
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.0e-54 218.0 179 59.2
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.0e-50 205.3 380 40.0
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.9e-45 188.7 371 37.7
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 1.8e-43 182.2 164 56.1
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.0e-43 179.9 239 45.6
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.0e-42 178.7 190 52.6
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.6e-37 159.8 177 44.6
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 3.2e-32 144.8 149 56.4
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 7.1e-32 143.7 132 59.1
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 1.2e-31 142.9 128 62.5
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 1.8e-27 129.0 125 60.0
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 4.1e-27 127.9 97 69.1
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 6.9e-27 127.1 132 52.3
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 2.2e-25 122.1 95 69.5
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.0e-17 96.7 63 76.2
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.1e-16 93.2 95 55.8
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 1.6e-15 89.4 92 54.3
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 4.7e-15 87.8 101 51.5
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 5.7e-13 80.9 178 38.8
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.3e-12 79.7 68 60.3
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.3e-12 79.7 154 29.2
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.2e-12 77.0 55 69.1
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.1e-11 75.1 104 42.3
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.3e-09 69.7 85 49.4


User provided reference genes

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