Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 4.0e-298 1027.3 512 100.0
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.7e-184 649.8 491 66.6
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.9e-175 619.8 466 65.7
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.0e-173 612.5 463 62.9
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.0e-172 609.8 466 66.1
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.0e-172 609.8 472 65.3
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 5.7e-172 608.2 480 64.2
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.0e-170 601.3 460 66.3
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 7.0e-170 601.3 438 68.5
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-169 600.1 491 62.9
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 7.8e-169 597.8 458 65.9
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 7.8e-169 597.8 484 63.6
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.0e-168 597.4 478 64.2
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.7e-168 596.7 480 63.5
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 3.0e-168 595.9 458 65.1
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 3.0e-168 595.9 474 61.4
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 5.0e-168 595.1 454 65.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 5.0e-168 595.1 474 61.6
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.1e-167 594.0 483 64.4
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 1.9e-167 593.2 452 65.7
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 9.5e-167 590.9 477 63.5
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.2e-166 590.5 460 63.0
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 2.8e-166 589.3 480 62.1
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 2.8e-166 589.3 493 61.7
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.7e-166 588.6 491 62.1
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 4.7e-166 588.6 474 61.0
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.4e-165 587.0 481 62.4
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.4e-165 587.0 481 62.8
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.4e-165 587.0 491 62.5
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.8e-165 586.6 492 60.4
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 1.8e-165 586.6 515 58.1
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.3e-165 586.3 469 64.4
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.3e-165 586.3 483 62.7
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.0e-165 585.5 491 62.1
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 4.0e-165 585.5 485 60.6
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.2e-164 583.9 474 62.4
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.5e-164 583.6 476 61.8
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 2.0e-164 583.2 489 62.0
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.6e-164 582.8 471 63.1
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.6e-164 582.8 508 60.4
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 5.8e-164 581.6 482 60.8
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 5.8e-164 581.6 493 60.0
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 5.8e-164 581.6 447 65.5
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.7e-163 580.1 445 64.9
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 2.2e-163 579.7 488 61.7
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.9e-163 579.3 451 62.5
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 3.7e-163 578.9 437 64.5
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 4.9e-163 578.6 505 60.4
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 6.4e-163 578.2 487 60.8
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 8.3e-163 577.8 485 60.4
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 8.3e-163 577.8 447 64.9
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.1e-162 577.4 454 63.0
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.1e-162 577.4 480 60.8
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.4e-162 577.0 448 62.9
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.4e-162 577.0 494 61.9
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 3.2e-162 575.9 498 58.8
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 3.2e-162 575.9 474 62.2
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 5.4e-162 575.1 448 62.7
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.4e-162 575.1 448 62.7
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 7.0e-162 574.7 497 59.4
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.2e-161 573.9 497 59.6
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.2e-161 573.9 495 60.0
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.7e-161 572.8 468 61.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.7e-161 572.8 468 61.8
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.0e-161 571.6 448 62.5
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 7.8e-161 571.2 486 60.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 7.8e-161 571.2 499 57.7
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 1.0e-160 570.9 495 58.4
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.3e-160 570.5 470 61.3
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.3e-160 569.7 448 62.3
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.0e-160 569.3 485 59.2
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.1e-159 567.4 485 59.8
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.1e-159 567.4 459 62.7
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 2.5e-159 566.2 462 62.3
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 7.3e-159 564.7 462 62.1
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.2e-158 563.9 470 59.6
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.6e-158 562.4 476 59.5
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.7e-158 562.0 437 64.5
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 4.7e-158 562.0 475 60.2
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 4.7e-158 562.0 475 60.2
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.4e-157 560.5 454 61.0
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 4.0e-157 558.9 447 62.6
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 5.2e-157 558.5 453 62.7
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 5.2e-157 558.5 518 57.1
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.2e-156 557.4 453 62.5
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 3.0e-152 542.7 464 58.8
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 6.6e-152 541.6 438 63.0
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 2.1e-150 536.6 539 54.9
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.1e-149 532.7 415 63.4
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.0e-148 530.0 492 56.9
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 5.4e-146 521.9 518 56.2
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.5e-143 513.8 395 63.3
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.3e-143 512.7 395 63.0
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 3.3e-143 512.7 480 56.7
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 3.6e-134 482.6 373 64.1
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 3.4e-132 476.1 420 57.9
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 8.4e-131 471.5 476 53.6
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.4e-130 468.8 475 52.8
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.3e-128 463.4 399 60.4
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.2e-124 451.1 452 52.9
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 7.6e-124 448.4 460 49.6
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 2.3e-120 436.8 440 51.8
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 1.3e-118 431.0 493 50.3
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 6.0e-113 412.1 356 59.6
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 3.8e-99 366.3 241 72.2
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.5e-95 354.4 245 70.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 2.3e-88 330.5 320 53.8
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-85 321.6 238 65.5
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-85 321.6 238 65.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 6.5e-83 312.4 214 69.6
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.1e-82 311.6 200 73.5
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.2e-82 310.1 250 63.6
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 7.2e-82 308.9 314 51.9
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.8e-77 294.3 288 55.9
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 5.9e-76 289.3 307 46.3
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 5.7e-71 272.7 268 54.1
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 2.2e-70 270.8 184 71.2
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 2.5e-66 257.3 181 66.9
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.4e-64 251.5 225 57.8
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 3.0e-64 250.4 184 65.8
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.4e-61 240.7 210 60.0
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.9e-59 233.8 224 54.0
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-57 228.4 222 53.2
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.8e-57 227.3 207 58.0
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.8e-56 222.6 153 68.6
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 2.0e-47 194.5 168 56.5
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.0e-43 182.2 156 57.7
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 4.7e-41 173.3 516 25.0
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.1e-37 162.2 506 28.9
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.6e-31 141.0 134 52.2
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.7e-30 138.3 170 44.7
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 7.1e-29 132.9 139 52.5
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.0e-24 117.1 122 48.4
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.4e-23 113.6 194 37.6
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 5.4e-21 106.7 290 31.4
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.5e-18 97.8 53 83.0
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-15 88.6 99 44.4
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.7e-14 85.1 148 38.5
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.8e-11 75.1 61 59.0
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 3.9e-11 73.9 50 62.0
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 1.5e-10 72.0 150 34.0
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-08 65.9 94 42.6
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 2.4e-08 64.7 69 56.5
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.8e-07 60.1 89 47.2
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 2.2e-06 58.2 75 45.3


User provided reference genes

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