Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0390 Papaver somniferum HOM05D003211 ORTHO05D003621 2.1e-130 469.2 258 100.0
PSO541G4808 Papaver somniferum HOM05D003211 ORTHO05D003621 5.5e-14 82.4 155 36.8
PSO675G6715 Papaver somniferum HOM05D003211 ORTHO05D003621 5.5e-14 82.4 155 36.8
Aqoxy6G02156 Aquilegia oxysepala HOM05D003211 ORTHO05D003621 9.8e-11 71.6 136 36.0
Lsat_1_v5_gn_3_72021 Lactuca sativa HOM05D003211 ORTHO05D003621 2.8e-10 70.1 70 47.1
Lsat_1_v5_gn_1_113880 Lactuca sativa HOM05D003211 ORTHO05D003621 3.7e-10 69.7 118 35.6
Lsat_1_v5_gn_5_63960 Lactuca sativa HOM05D003211 ORTHO05D003621 3.7e-10 69.7 124 36.3
Actinidia28720 Actinidia chinensis HOM05D003211 ORTHO05D003621 6.3e-10 68.9 67 46.3
Potri.005G242700 Populus trichocarpa HOM05D003211 ORTHO05D003621 8.3e-10 68.6 125 32.0
CSS0033408 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 1.1e-09 68.2 134 34.3
HanXRQChr16g0531491 Helianthus annuus HOM05D003211 ORTHO05D003621 1.4e-09 67.8 70 47.1
Cc07_g11110 Coffea canephora HOM05D003211 ORTHO05D003621 1.8e-09 67.4 63 47.6
TAR381G1330 Trochodendron aralioides HOM05D003211 ORTHO05D003621 1.8e-09 67.4 63 47.6
DCAR_010140 Daucus carota HOM05D003211 ORTHO05D003621 2.4e-09 67.0 63 47.6
Lsat_1_v5_gn_0_42440 Lactuca sativa HOM05D003211 ORTHO05D003621 2.4e-09 67.0 59 47.5
TWI12G0893 Tripterygium wilfordii HOM05D003211 ORTHO05D003621 2.4e-09 67.0 118 33.1
Potri.002G018900 Populus trichocarpa HOM05D003211 ORTHO05D003621 3.1e-09 66.6 125 32.0
Gohir.D02G098700 Gossypium hirsutum HOM05D003211 ORTHO05D003621 4.1e-09 66.2 115 33.9
Gorai.005G112600 Gossypium raimondii HOM05D003211 ORTHO05D003621 4.1e-09 66.2 115 33.9
QL02p012254 Quercus lobata HOM05D003211 ORTHO05D003621 5.4e-09 65.9 110 34.5
Phvul.009G018000 Phaseolus vulgaris HOM05D003211 ORTHO05D003621 7.0e-09 65.5 73 43.8
Actinidia15442 Actinidia chinensis HOM05D003211 ORTHO05D003621 9.1e-09 65.1 63 46.0
Gohir.A02G083400 Gossypium hirsutum HOM05D003211 ORTHO05D003621 9.1e-09 65.1 115 33.9
Medtr3g114080 Medicago truncatula HOM05D003211 ORTHO05D003621 9.1e-09 65.1 63 46.0
Psat5g012920 Pisum sativum HOM05D003211 ORTHO05D003621 9.1e-09 65.1 63 46.0
Cfa013985 Carpinus fangiana HOM05D003211 ORTHO05D003621 1.2e-08 64.7 119 31.9
Manes.18G011114 Manihot esculenta HOM05D003211 ORTHO05D003621 1.2e-08 64.7 110 34.5
PGR031G0024 Punica granatum HOM05D003211 ORTHO05D003621 1.2e-08 64.7 120 33.3
SalBow3G1150 Salvia bowleyana HOM05D003211 ORTHO05D003621 1.2e-08 64.7 63 46.0
SalBow3G3139 Salvia bowleyana HOM05D003211 ORTHO05D003621 1.2e-08 64.7 63 46.0
Ca_15479_v3 Cicer arietinum L. HOM05D003211 ORTHO05D003621 1.6e-08 64.3 63 46.0
Dinv39540 Davidia involucrata HOM05D003211 ORTHO05D003621 1.6e-08 64.3 151 31.8
Migut.C00865 Erythranthe guttata HOM05D003211 ORTHO05D003621 1.6e-08 64.3 59 47.5
Manes.05G144900 Manihot esculenta HOM05D003211 ORTHO05D003621 1.6e-08 64.3 73 42.5
Thecc.08G048400 Theobroma cacao HOM05D003211 ORTHO05D003621 1.6e-08 64.3 73 43.8
Cpa.g.sc26.295 Carica papaya HOM05D003211 ORTHO05D003621 2.0e-08 63.9 73 43.8
COL.COLO4_26114 Corchorus olitorius HOM05D003211 ORTHO05D003621 2.0e-08 63.9 125 31.2
Duzib116G0338 Durio zibethinus HOM05D003211 ORTHO05D003621 2.0e-08 63.9 125 31.2
Eucgr.H00950 Eucalyptus grandis HOM05D003211 ORTHO05D003621 2.0e-08 63.9 101 34.7
Hma1.2p1_0023F.1_g015680 Hydrangea macrophylla HOM05D003211 ORTHO05D003621 2.0e-08 63.9 89 37.1
MBI05_g22093_MAGBIO Magnolia biondii HOM05D003211 ORTHO05D003621 2.0e-08 63.9 73 41.1
Nn6g31986 Nelumbo nucifera HOM05D003211 ORTHO05D003621 2.0e-08 63.9 63 44.4
Solyc02g062000.4 Solanum lycopersicum HOM05D003211 ORTHO05D003621 2.0e-08 63.9 119 30.3
Sopen02g012960 Solanum pennellii HOM05D003211 ORTHO05D003621 2.0e-08 63.9 119 30.3
Aa31LG4G6080 Aethionema arabicum HOM05D003211 ORTHO05D003621 2.7e-08 63.5 90 35.6
arahy.Tifrunner.gnm1.ann1.WVQ74Q Arachis hypogaea HOM05D003211 ORTHO05D003621 2.7e-08 63.5 63 44.4
arahy.Tifrunner.gnm1.ann1.YJZ5EZ Arachis hypogaea HOM05D003211 ORTHO05D003621 2.7e-08 63.5 63 44.4
CANSAT25G3811 Cannabis sativa HOM05D003211 ORTHO05D003621 2.7e-08 63.5 63 46.0
Eucgr.H00952 Eucalyptus grandis HOM05D003211 ORTHO05D003621 2.7e-08 63.5 101 34.7
Glyma.06G023000 Glycine max HOM05D003211 ORTHO05D003621 2.7e-08 63.5 63 44.4
Lsat_1_v5_gn_2_9160 Lactuca sativa HOM05D003211 ORTHO05D003621 2.7e-08 63.5 71 42.3
MBI08_g10498_MAGBIO Magnolia biondii HOM05D003211 ORTHO05D003621 2.7e-08 63.5 117 32.5
PGSC0003DMG400023883 Solanum tuberosum HOM05D003211 ORTHO05D003621 2.7e-08 63.5 113 32.7
TWI36G1632 Tripterygium wilfordii HOM05D003211 ORTHO05D003621 2.7e-08 63.5 101 33.7
unitig_26.g9886 Utricularia gibba HOM05D003211 ORTHO05D003621 2.7e-08 63.5 73 41.1
BcaB03g12880 Brassica carinata HOM05D003211 ORTHO05D003621 3.5e-08 63.2 73 42.5
CiPaw.02G001000 Carya illinoinensis HOM05D003211 ORTHO05D003621 3.5e-08 63.2 73 42.5
Cc10_g01390 Coffea canephora HOM05D003211 ORTHO05D003621 3.5e-08 63.2 113 32.7
Glyma.04G023067 Glycine max HOM05D003211 ORTHO05D003621 3.5e-08 63.2 63 44.4
Lalb_Chr19g0131471 Lupinus albus HOM05D003211 ORTHO05D003621 3.5e-08 63.2 73 42.5
Nitab4.5_0009349g0010 Nicotiana tabacum HOM05D003211 ORTHO05D003621 3.5e-08 63.2 119 30.3
Sabra02G0015100 Salix brachista HOM05D003211 ORTHO05D003621 3.5e-08 63.2 115 31.3
Atru.chr13.250 Acer truncatum HOM05D003211 ORTHO05D003621 4.5e-08 62.8 63 46.0
ATR1155G038 Amborella trichopoda HOM05D003211 ORTHO05D003621 4.5e-08 62.8 73 42.5
BcaC07g39021 Brassica carinata HOM05D003211 ORTHO05D003621 4.5e-08 62.8 73 42.5
A08p29490 Brassica napus HOM05D003211 ORTHO05D003621 4.5e-08 62.8 73 42.5
C08p19950 Brassica napus HOM05D003211 ORTHO05D003621 4.5e-08 62.8 73 42.5
BolC8t49632H Brassica oleracea HOM05D003211 ORTHO05D003621 4.5e-08 62.8 73 42.5
BraA08t34886Z Brassica rapa HOM05D003211 ORTHO05D003621 4.5e-08 62.8 73 42.5
CSS0036463 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 4.5e-08 62.8 125 30.4
CAN.G311.51 Capsicum annuum HOM05D003211 ORTHO05D003621 4.5e-08 62.8 96 34.4
Ciclev10000707m.g Citrus clementina HOM05D003211 ORTHO05D003621 4.5e-08 62.8 63 44.4
Haze_22671 Corylus avellana HOM05D003211 ORTHO05D003621 4.5e-08 62.8 115 32.2
ECA246G2864 Erigeron canadensis HOM05D003211 ORTHO05D003621 4.5e-08 62.8 73 42.5
Gorai.009G192800 Gossypium raimondii HOM05D003211 ORTHO05D003621 4.5e-08 62.8 63 44.4
Lalb_Chr03g0033451 Lupinus albus HOM05D003211 ORTHO05D003621 4.5e-08 62.8 73 42.5
SMO358G0360 Selaginella moellendorffii HOM05D003211 ORTHO05D003621 4.5e-08 62.8 87 39.1
BolC5t30571H Brassica oleracea HOM05D003211 ORTHO05D003621 5.9e-08 62.4 96 35.4
CAN.G2331.3 Capsicum annuum HOM05D003211 ORTHO05D003621 5.9e-08 62.4 118 31.4
Eucgr.H00938 Eucalyptus grandis HOM05D003211 ORTHO05D003621 5.9e-08 62.4 115 32.2
Nn5g30788 Nelumbo nucifera HOM05D003211 ORTHO05D003621 5.9e-08 62.4 73 42.5
PGSC0003DMG400003585 Solanum tuberosum HOM05D003211 ORTHO05D003621 5.9e-08 62.4 118 30.5
SGA_v2.0_scaffold108G31000 Striga asiatica HOM05D003211 ORTHO05D003621 5.9e-08 62.4 63 42.9
Thhalv10007122m.g Eutrema salsugineum HOM05D003211 ORTHO05D003621 7.7e-08 62.0 96 35.4
Lj1g0003320 Lotus japonicus HOM05D003211 ORTHO05D003621 7.7e-08 62.0 63 42.9
RcHm_v2.0_Chr6g0303371 Rosa chinensis HOM05D003211 ORTHO05D003621 7.7e-08 62.0 63 42.9
Sp1g17880 Schrenkiella parvula HOM05D003211 ORTHO05D003621 7.7e-08 62.0 96 35.4
Hund16506 Selenicereus undatus HOM05D003211 ORTHO05D003621 7.7e-08 62.0 67 43.3
Solyc04g081750.4 Solanum lycopersicum HOM05D003211 ORTHO05D003621 7.7e-08 62.0 73 39.7
Sopen04g035380 Solanum pennellii HOM05D003211 ORTHO05D003621 7.7e-08 62.0 73 39.7
PGSC0003DMG400009878 Solanum tuberosum HOM05D003211 ORTHO05D003621 7.7e-08 62.0 73 39.7
VMungo1309G1711 Vigna mungo HOM05D003211 ORTHO05D003621 7.7e-08 62.0 58 46.6
CSS0039753 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 1.0e-07 61.6 110 31.8
ClCG05G015550 Citrullus lanatus HOM05D003211 ORTHO05D003621 1.0e-07 61.6 67 41.8
Duzib093G0924 Durio zibethinus HOM05D003211 ORTHO05D003621 1.0e-07 61.6 73 42.5
FvH4_2g38130 Fragaria vesca HOM05D003211 ORTHO05D003621 1.0e-07 61.6 63 42.9
MD15G1009800 Malus domestica HOM05D003211 ORTHO05D003621 1.0e-07 61.6 63 42.9
Sabra05G0188000 Salix brachista HOM05D003211 ORTHO05D003621 1.0e-07 61.6 73 41.1
Sed0016624 Sechium edule HOM05D003211 ORTHO05D003621 1.0e-07 61.6 63 44.4
TAR376G0478 Trochodendron aralioides HOM05D003211 ORTHO05D003621 1.0e-07 61.6 115 33.0
FAN15G3158 Fragaria x ananassa HOM05D003211 ORTHO05D003621 1.3e-07 61.2 73 38.4
FAN20G1651 Fragaria x ananassa HOM05D003211 ORTHO05D003621 1.3e-07 61.2 73 38.4
FAN27G3060 Fragaria x ananassa HOM05D003211 ORTHO05D003621 1.3e-07 61.2 73 38.4
Hma1.2p1_0869F.1_g230680 Hydrangea macrophylla HOM05D003211 ORTHO05D003621 1.3e-07 61.2 67 40.3
Prupe.1G362200 Prunus persica HOM05D003211 ORTHO05D003621 1.3e-07 61.2 73 41.1
GSVIVG01009956001 Vitis vinifera HOM05D003211 ORTHO05D003621 1.3e-07 61.2 115 30.4
CDE05G2100 Ceratophyllum demersum HOM05D003211 ORTHO05D003621 1.7e-07 60.8 63 44.4
Gohir.A05G184800 Gossypium hirsutum HOM05D003211 ORTHO05D003621 1.7e-07 60.8 63 42.9
Sc03g0003710 Simmondsia chinensis HOM05D003211 ORTHO05D003621 1.7e-07 60.8 58 46.6
arahy.Tifrunner.gnm1.ann1.R2EEBA Arachis hypogaea HOM05D003211 ORTHO05D003621 2.2e-07 60.5 73 42.5
EL10Ac1g02154 Beta vulgaris HOM05D003211 ORTHO05D003621 2.2e-07 60.5 63 44.4
Carub.0001s1964 Capsella rubella HOM05D003211 ORTHO05D003621 2.2e-07 60.5 94 35.1
CAN.G2331.1 Capsicum annuum HOM05D003211 ORTHO05D003621 2.2e-07 60.5 118 30.5
AUR62013929 Chenopodium quinoa HOM05D003211 ORTHO05D003621 2.2e-07 60.5 63 44.4
AUR62018262 Chenopodium quinoa HOM05D003211 ORTHO05D003621 2.2e-07 60.5 63 44.4
MELO3C003739.2 Cucumis melo HOM05D003211 ORTHO05D003621 2.2e-07 60.5 114 33.3
CsaV3_3G046000 Cucumis sativus L. HOM05D003211 ORTHO05D003621 2.2e-07 60.5 114 33.3
Gohir.D05G187600 Gossypium hirsutum HOM05D003211 ORTHO05D003621 2.2e-07 60.5 63 42.9
Peaxi162Scf00328g00527 Petunia axillaris HOM05D003211 ORTHO05D003621 2.2e-07 60.5 114 30.7
Pp3c14_11260 Physcomitrium patens HOM05D003211 ORTHO05D003621 2.2e-07 60.5 63 42.9
THA.LOC104811427 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 2.2e-07 60.5 131 30.5
MSTRG.2735 Avicennia marina HOM05D003211 ORTHO05D003621 2.9e-07 60.1 107 33.6
Dinv40121 Davidia involucrata HOM05D003211 ORTHO05D003621 2.9e-07 60.1 63 44.4
Migut.H02184 Erythranthe guttata HOM05D003211 ORTHO05D003621 2.9e-07 60.1 111 34.2
SGA_v2.0_scaffold92G28198 Striga asiatica HOM05D003211 ORTHO05D003621 2.9e-07 60.1 59 44.1
AL1G32920 Arabidopsis lyrata HOM05D003211 ORTHO05D003621 3.8e-07 59.7 96 33.3
arahy.Tifrunner.gnm1.ann1.PQ7T65 Arachis hypogaea HOM05D003211 ORTHO05D003621 3.8e-07 59.7 63 42.9
MD08G1009900 Malus domestica HOM05D003211 ORTHO05D003621 3.8e-07 59.7 63 41.3
Nitab4.5_0000188g0210 Nicotiana tabacum HOM05D003211 ORTHO05D003621 3.8e-07 59.7 113 31.9
Sed0006879 Sechium edule HOM05D003211 ORTHO05D003621 3.8e-07 59.7 114 32.5
BcaC05g25910 Brassica carinata HOM05D003211 ORTHO05D003621 5.0e-07 59.3 96 34.4
C05p18600 Brassica napus HOM05D003211 ORTHO05D003621 5.0e-07 59.3 96 34.4
Hund01677 Selenicereus undatus HOM05D003211 ORTHO05D003621 5.0e-07 59.3 63 41.3
SEGI_01879 Sequoiadendron giganteum HOM05D003211 ORTHO05D003621 5.0e-07 59.3 63 42.9
vmacro18428 Vaccinium macrocarpon HOM05D003211 ORTHO05D003621 5.0e-07 59.3 67 41.8
Zm00001eb228270 Zea mays HOM05D003211 ORTHO05D003621 5.0e-07 59.3 114 29.8
AagrBONN_evm.TU.Sc2ySwM_228.2325 Anthoceros agrestis HOM05D003211 ORTHO05D003621 6.5e-07 58.9 68 41.2
AT1G20110 Arabidopsis thaliana HOM05D003211 ORTHO05D003621 6.5e-07 58.9 86 33.7
EL10Ac6g15518 Beta vulgaris HOM05D003211 ORTHO05D003621 6.5e-07 58.9 67 41.8
CARHR020600 Cardamine hirsuta HOM05D003211 ORTHO05D003621 6.5e-07 58.9 86 33.7
HanXRQChr06g0183801 Helianthus annuus HOM05D003211 ORTHO05D003621 6.5e-07 58.9 58 44.8
HanXRQChr14g0429841 Helianthus annuus HOM05D003211 ORTHO05D003621 6.5e-07 58.9 58 44.8
Ah.11g040010 Amaranthus hybridus HOM05D003211 ORTHO05D003621 8.5e-07 58.5 63 39.7
Lj4A223T32 Lonicera japonica HOM05D003211 ORTHO05D003621 8.5e-07 58.5 122 30.3
THA.LOC104809587 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 8.5e-07 58.5 86 34.9
CBR_g30242 Chara braunii HOM05D003211 ORTHO05D003621 1.1e-06 58.2 67 40.3
DCAR_013883 Daucus carota HOM05D003211 ORTHO05D003621 1.1e-06 58.2 99 35.4
MSTRG.1173 Avicennia marina HOM05D003211 ORTHO05D003621 1.5e-06 57.8 59 44.1
Nitab4.5_0006505g0010 Nicotiana tabacum HOM05D003211 ORTHO05D003621 1.5e-06 57.8 85 35.3
Os06g0724100 Oryza sativa ssp. japonica HOM05D003211 ORTHO05D003621 1.5e-06 57.8 114 28.9
CSS0050063 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 1.9e-06 57.4 63 41.3
ECA238G1606 Erigeron canadensis HOM05D003211 ORTHO05D003621 1.9e-06 57.4 120 33.3
Ah.03g149170 Amaranthus hybridus HOM05D003211 ORTHO05D003621 2.5e-06 57.0 113 30.1
Mapoly0053s0010 Marchantia polymorpha HOM05D003211 ORTHO05D003621 3.2e-06 56.6 63 39.7
Glyma.17G259400 Glycine max HOM05D003211 ORTHO05D003621 4.2e-06 56.2 91 37.4
HPP92_002464 Vanilla planifolia HOM05D003211 ORTHO05D003621 4.2e-06 56.2 59 42.4
HPP92_002479 Vanilla planifolia HOM05D003211 ORTHO05D003621 5.5e-06 55.8 59 42.4
Rhsim08G0031800 Rhododendron simsii HOM05D003211 ORTHO05D003621 7.2e-06 55.5 58 41.4
BcaB03g14334 Brassica carinata HOM05D000152 ORTHO05D000609 9.4e-06 55.1 73 41.1
Os07g0573300 Oryza sativa ssp. japonica HOM05D003211 ORTHO05D003621 9.4e-06 55.1 81 33.3


User provided reference genes

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