Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 4.7e-92 341.3 182 100.0
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.4e-91 339.7 182 99.5
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 6.1e-68 261.2 165 81.2
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 3.4e-66 255.4 165 78.2
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 9.2e-64 247.3 164 78.0
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 7.3e-61 237.7 169 72.8
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.2e-60 236.9 165 73.9
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 2.8e-60 235.7 162 74.7
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 2.8e-60 235.7 166 74.1
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 3.6e-60 235.3 162 74.7
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 4.7e-60 235.0 157 73.9
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 8.0e-60 234.2 153 75.8
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 1.8e-59 233.0 156 73.7
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 2.3e-59 232.6 170 71.8
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 2.3e-59 232.6 170 71.8
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.3e-59 232.6 170 71.8
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 3.0e-59 232.3 167 69.5
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 3.0e-59 232.3 170 69.4
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 3.0e-59 232.3 165 70.9
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 4.0e-59 231.9 165 72.7
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 6.8e-59 231.1 178 69.7
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 8.9e-59 230.7 164 69.5
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 1.2e-58 230.3 165 69.7
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.0e-58 229.6 170 70.6
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.6e-58 229.2 153 75.8
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.6e-58 229.2 165 68.5
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 3.4e-58 228.8 159 71.1
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 3.4e-58 228.8 167 68.3
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 4.4e-58 228.4 163 69.9
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 7.5e-58 227.6 178 68.5
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 7.5e-58 227.6 178 68.5
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 9.8e-58 227.3 166 70.5
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 1.3e-57 226.9 160 71.9
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 2.2e-57 226.1 180 66.7
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 2.9e-57 225.7 167 68.9
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 2.9e-57 225.7 178 66.9
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 3.7e-57 225.3 160 74.4
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 3.7e-57 225.3 167 67.1
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 4.9e-57 224.9 164 71.3
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 6.4e-57 224.6 168 70.2
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.1e-56 223.8 144 78.5
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.4e-56 222.6 166 69.9
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 2.4e-56 222.6 177 65.0
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 3.2e-56 222.2 163 71.8
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 3.2e-56 222.2 163 68.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 3.2e-56 222.2 168 69.6
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.1e-56 221.9 168 69.0
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 5.4e-56 221.5 164 68.9
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 7.0e-56 221.1 180 66.1
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 9.2e-56 220.7 168 69.0
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 9.2e-56 220.7 163 70.6
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 3.5e-55 218.8 158 70.3
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 3.5e-55 218.8 171 65.5
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 3.5e-55 218.8 162 69.1
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 4.6e-55 218.4 152 73.0
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 3.0e-54 215.7 199 60.8
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 5.0e-54 214.9 151 73.5
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 5.0e-54 214.9 150 73.3
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 5.0e-54 214.9 160 70.0
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 5.0e-54 214.9 160 70.0
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 6.6e-54 214.5 152 71.1
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.1e-53 213.8 178 61.8
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.5e-53 213.4 151 72.8
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.5e-53 213.4 178 64.0
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.5e-53 212.6 156 68.6
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.6e-53 211.5 152 72.4
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 5.6e-53 211.5 155 67.1
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 7.3e-53 211.1 155 65.8
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.1e-52 209.5 160 67.5
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 2.3e-51 206.1 148 69.6
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 3.1e-51 205.7 161 67.1
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 4.0e-51 205.3 157 68.2
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 5.2e-51 204.9 151 70.2
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.2e-51 204.9 151 68.9
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.2e-50 203.8 155 65.8
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.5e-50 203.4 153 69.9
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.5e-50 203.4 143 73.4
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.4e-50 201.8 142 72.5
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 5.8e-50 201.4 151 68.9
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 9.8e-50 200.7 152 65.8
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 9.8e-50 200.7 194 58.2
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 9.8e-50 200.7 152 65.8
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 1.7e-49 199.9 160 67.5
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 2.9e-49 199.1 154 67.5
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.4e-48 196.1 138 73.2
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.1e-48 195.3 150 67.3
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 5.4e-48 194.9 149 67.8
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 5.4e-48 194.9 149 67.8
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 9.2e-48 194.1 143 71.3
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 9.2e-48 194.1 149 67.8
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 9.2e-48 194.1 149 67.8
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 9.2e-48 194.1 143 71.3
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.2e-47 193.7 158 62.7
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 2.0e-47 193.0 143 71.3
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 2.7e-47 192.6 138 71.7
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.7e-47 192.6 141 70.2
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.7e-47 192.6 124 77.4
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 4.6e-47 191.8 149 66.4
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 7.8e-47 191.0 151 66.9
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.0e-46 190.7 148 69.6
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 1.1e-45 187.2 142 69.0
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.5e-45 186.8 150 63.3
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.2e-44 183.7 158 63.3
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 1.4e-43 180.3 180 55.6
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 4.0e-43 178.7 157 58.6
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.7e-41 173.3 104 80.8
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 4.9e-41 171.8 128 71.1
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.1e-40 170.6 128 71.1
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 7.1e-40 167.9 118 72.9
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 2.1e-39 166.4 108 75.9
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 3.5e-39 165.6 131 67.2
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 3.0e-38 162.5 109 76.1
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 3.9e-38 162.2 126 65.9
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 5.1e-38 161.8 109 78.0
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.5e-37 160.2 120 65.8
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 3.6e-36 155.6 103 79.6
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 4.0e-35 152.1 103 73.8
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 8.9e-35 151.0 141 58.2
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 5.8e-34 148.3 101 74.3
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 3.8e-33 145.6 118 64.4
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 3.5e-31 139.0 110 66.4
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 4.6e-31 138.7 148 47.3
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 4.7e-28 128.6 84 77.4
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.1e-27 127.5 81 75.3
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 3.0e-22 109.4 96 64.6
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.6e-21 105.1 137 51.1
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 3.6e-20 102.4 130 43.1
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 1.2e-18 97.4 101 55.4
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.5e-18 97.1 130 40.8
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 1.7e-17 93.6 126 41.3
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 2.7e-15 86.3 57 71.9
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.8e-14 83.6 58 67.2
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 1.1e-13 80.9 53 67.9
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 2.2e-09 66.6 47 68.1
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 8.4e-09 64.7 48 66.7
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 8.4e-09 64.7 48 66.7
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 1.8e-06 57.0 48 66.7


User provided reference genes

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