Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 4.0e-94 348.2 189 100.0
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 7.2e-88 327.4 189 92.6
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 4.0e-54 215.3 177 66.7
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 1.7e-52 209.9 172 67.4
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 7.6e-37 157.9 180 49.4
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 4.2e-35 152.1 177 48.6
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.2e-34 150.6 177 48.6
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 3.5e-34 149.1 192 45.8
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.0e-34 148.3 192 44.3
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 6.6e-33 144.8 183 47.5
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 5.6e-32 141.7 196 43.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 7.3e-32 141.4 170 46.5
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 7.3e-32 141.4 179 45.8
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.1e-31 139.8 170 45.9
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 2.8e-31 139.4 188 46.8
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 2.8e-31 139.4 184 43.5
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 3.6e-31 139.0 176 44.3
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 4.8e-31 138.7 196 42.9
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 4.8e-31 138.7 160 45.6
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 4.8e-31 138.7 190 44.7
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 6.2e-31 138.3 176 44.3
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.4e-30 137.1 170 45.3
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 1.4e-30 137.1 178 44.4
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 1.8e-30 136.7 179 45.8
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.4e-30 136.3 185 45.4
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.0e-30 135.6 160 45.0
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 9.0e-30 134.4 175 44.6
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 9.0e-30 134.4 196 41.8
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 1.5e-29 133.7 182 44.0
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 2.0e-29 133.3 160 44.4
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 2.6e-29 132.9 195 44.1
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 2.6e-29 132.9 201 40.3
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.6e-29 132.9 167 43.7
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 2.6e-29 132.9 190 40.0
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 4.5e-29 132.1 178 44.4
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 7.6e-29 131.3 157 46.5
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 7.6e-29 131.3 192 39.1
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 9.9e-29 131.0 171 45.6
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 9.9e-29 131.0 201 39.3
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 1.3e-28 130.6 182 45.6
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.7e-28 130.2 189 43.4
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 3.8e-28 129.0 191 42.9
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.9e-28 128.6 143 48.3
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 6.4e-28 128.3 175 44.6
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 8.4e-28 127.9 160 43.1
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 8.4e-28 127.9 187 43.3
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.4e-27 127.1 175 40.6
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.9e-27 126.7 191 41.9
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 2.4e-27 126.3 177 41.8
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 3.2e-27 125.9 174 40.2
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 5.4e-27 125.2 172 44.8
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 9.3e-27 124.4 184 43.5
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 9.3e-27 124.4 197 39.6
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 9.3e-27 124.4 201 38.8
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.6e-26 123.6 181 40.3
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 1.6e-26 123.6 184 43.5
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.6e-26 123.6 165 43.0
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 2.7e-26 122.9 153 43.1
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 2.7e-26 122.9 176 40.9
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 3.5e-26 122.5 188 40.4
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 3.5e-26 122.5 199 38.2
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 3.5e-26 122.5 187 41.2
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.6e-26 122.1 180 42.2
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 4.6e-26 122.1 189 41.8
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 7.9e-26 121.3 191 41.9
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 7.9e-26 121.3 175 40.6
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.0e-25 120.9 186 41.4
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.0e-25 120.9 178 42.1
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.0e-25 120.9 180 42.2
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 2.3e-25 119.8 187 38.5
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 5.1e-25 118.6 130 46.2
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.1e-25 118.6 182 40.7
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 5.1e-25 118.6 175 38.3
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.5e-24 117.1 177 40.7
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.9e-24 116.7 190 36.3
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 3.3e-24 115.9 185 38.4
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 4.3e-24 115.5 182 39.6
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 4.3e-24 115.5 186 41.9
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 7.4e-24 114.8 185 38.9
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.4e-24 114.8 182 40.1
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 9.6e-24 114.4 176 40.3
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 2.8e-23 112.8 203 36.0
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 4.8e-23 112.1 141 44.0
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 6.2e-23 111.7 158 43.7
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 6.2e-23 111.7 188 39.4
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 8.1e-23 111.3 152 42.8
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 3.1e-22 109.4 176 39.2
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 5.3e-22 108.6 194 37.1
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 5.3e-22 108.6 165 40.0
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 5.3e-22 108.6 176 39.2
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 6.9e-22 108.2 178 36.0
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.5e-21 107.1 141 45.4
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 1.5e-21 107.1 158 40.5
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 1.5e-21 107.1 183 36.1
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.4e-21 105.9 153 39.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.4e-21 105.9 159 39.0
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 5.8e-21 105.1 149 40.3
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 7.6e-21 104.8 138 44.9
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 7.6e-21 104.8 153 39.2
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 7.6e-21 104.8 157 42.0
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 9.9e-21 104.4 138 44.9
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 9.9e-21 104.4 142 44.4
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.7e-20 103.6 149 40.3
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.9e-20 102.8 176 38.1
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 8.4e-20 101.3 145 35.9
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.1e-19 100.9 156 41.7
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.1e-19 100.9 182 37.4
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.4e-19 100.5 169 40.8
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 4.2e-19 99.0 189 34.4
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 5.5e-19 98.6 183 34.4
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 1.2e-18 97.4 189 33.9
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.2e-18 97.4 183 34.4
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 1.6e-18 97.1 159 39.6
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 4.6e-18 95.5 194 37.6
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.0e-17 94.4 152 38.8
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.8e-17 93.6 157 42.0
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 3.9e-17 92.4 186 34.4
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 5.1e-17 92.0 178 34.8
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 6.7e-17 91.7 186 35.5
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 6.7e-17 91.7 172 37.2
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 8.7e-17 91.3 117 41.9
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.5e-16 90.5 119 42.9
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.9e-16 90.1 181 34.3
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.5e-16 89.7 125 39.2
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 5.6e-16 88.6 163 33.1
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 1.3e-15 87.4 176 35.2
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 1.3e-15 87.4 268 29.9
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 2.1e-15 86.7 151 33.8
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.1e-15 86.7 165 35.2
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 2.8e-15 86.3 153 34.0
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 3.7e-15 85.9 185 35.7
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 6.2e-15 85.1 192 31.8
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.4e-14 84.0 179 32.4
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 1.4e-14 84.0 102 42.2
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.1e-14 82.8 187 33.2
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 6.9e-14 81.6 137 43.1
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.2e-13 80.9 128 41.4
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.0e-13 80.1 129 37.2
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.5e-13 79.0 146 32.2
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.2e-12 76.6 83 45.8
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 2.9e-12 76.3 137 33.6
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 6.5e-12 75.1 134 32.8
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 6.5e-12 75.1 61 54.1
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 4.2e-11 72.4 169 37.3
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.1e-10 70.1 96 37.5
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 7.9e-10 68.2 88 38.6
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.8e-09 67.0 112 44.6
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 2.2e-07 60.1 113 38.9
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 2.2e-07 60.1 92 41.3
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 2.2e-07 60.1 79 41.8
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 2.8e-07 59.7 98 40.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 4.8e-07 58.9 119 31.1
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 6.9e-06 55.1 109 33.9


User provided reference genes

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