Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 3953.3 1985 100.0
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 3871.2 1985 97.9
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2300.0 2044 59.8
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2263.8 2038 59.6
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2228.0 2032 59.0
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 2094.3 2038 56.4
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2073.1 1994 55.9
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2063.1 2028 55.7
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2050.0 2025 55.7
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1976.8 2057 53.5
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1934.1 2022 54.0
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1932.1 2039 53.4
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1930.2 2019 52.7
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1902.9 2007 51.5
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1894.4 2068 51.6
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1892.5 2012 52.8
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1889.8 2019 52.6
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1884.8 2010 52.6
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1884.8 2015 52.9
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1876.7 2014 52.0
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1876.3 2021 51.9
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1875.1 2009 52.0
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1870.1 2012 52.0
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1868.2 1993 52.3
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1867.8 2024 51.5
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1865.1 2019 51.0
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1852.4 2007 51.6
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1846.2 2039 51.3
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1845.5 2052 50.8
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1844.7 2035 51.4
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1830.1 2032 49.8
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1806.6 2013 50.8
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1795.0 2010 50.1
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1791.9 2045 49.6
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1790.0 2029 50.5
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1737.6 2021 49.4
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1733.8 2017 48.6
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1733.0 2015 48.5
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1728.0 2012 48.7
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1716.4 2064 48.0
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1697.9 2019 47.4
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1688.7 2024 47.1
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1688.3 2042 47.5
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1687.5 2041 49.3
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1684.5 2004 47.3
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1681.8 2027 47.1
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1679.8 2019 48.7
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1675.2 2011 47.6
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1674.8 2006 47.4
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1671.0 2030 47.3
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1666.0 2002 47.1
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1646.3 2007 46.5
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1640.6 2018 46.7
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1640.2 2008 46.8
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1625.9 2029 47.1
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1617.8 1984 48.3
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1616.7 2008 46.8
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1602.0 2023 46.6
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1600.9 2022 46.4
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1599.3 2043 46.1
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1586.6 1932 46.9
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1583.9 2009 46.7
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1568.9 1989 46.6
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1560.0 2017 45.3
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1553.5 2047 44.5
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1550.4 1997 45.8
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1546.9 2001 45.6
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1546.2 1946 46.2
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1545.4 1994 45.1
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1542.3 1992 45.0
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1538.1 1990 45.5
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1536.2 1941 46.4
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1535.8 1998 45.6
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1533.5 2027 44.5
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1526.1 1993 45.5
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1517.7 1996 45.7
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1514.2 1949 45.9
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1508.8 1992 45.3
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1497.6 2145 42.2
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1497.6 1992 45.0
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1497.3 1980 45.3
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1494.6 1992 44.8
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1493.8 1992 44.8
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1492.2 1992 44.8
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1478.4 2090 43.1
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1463.7 1951 44.7
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1463.0 2031 44.2
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1444.1 1737 48.0
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1439.9 1739 47.7
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1299.3 1480 50.3
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1290.0 1794 42.1
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1288.9 1475 50.0
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1287.3 2027 39.2
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1196.8 1754 41.3
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1179.1 2020 38.3
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 0.0e+00 1082.4 2125 35.6
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 2.5e-308 1063.1 1207 49.2
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.2e-304 1050.0 1694 39.2
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 1.1e-300 1037.7 1703 39.4
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 4.2e-295 1019.2 1468 40.8
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 2.3e-245 854.0 2162 31.2
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 3.2e-210 737.3 2122 29.1
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.3e-203 715.3 1984 30.2
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.7e-190 670.6 1742 31.4
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 8.7e-184 649.4 675 55.4
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 2.0e-159 568.5 1880 26.8
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.0e-147 529.6 396 66.7
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.2e-147 528.5 442 62.4
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.2e-143 516.2 1205 32.1
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 2.8e-129 468.4 386 60.6
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 7.0e-125 453.8 351 67.5
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 8.3e-118 430.3 272 80.5
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 7.0e-117 427.2 443 52.1
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.3e-115 422.9 1136 30.3
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.4e-111 408.3 359 62.1
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 4.7e-105 387.9 269 72.5
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.2e-76 293.5 198 70.7
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 3.3e-74 285.4 371 46.4
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.2e-71 276.9 513 34.9
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 4.8e-65 255.0 261 52.5
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 8.7e-59 234.2 230 51.3
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.5e-58 233.4 196 61.2
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 1.4e-56 226.9 180 63.9
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 4.4e-42 178.7 368 33.7
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.2e-37 162.2 312 35.3
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 7.5e-34 151.4 178 53.4
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 6.3e-33 148.3 86 77.9
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 2.7e-31 142.9 218 37.2
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 6.1e-28 131.7 582 23.4
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 3.4e-26 125.9 353 28.0
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.8e-25 122.1 282 30.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 2.3e-19 103.2 67 71.6
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 6.8e-19 101.7 67 70.1
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-18 100.9 101 48.5
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.0e-18 100.1 102 52.0
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 6.3e-17 95.1 63 71.4
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.1e-16 94.4 68 67.6
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.8e-16 93.6 68 60.3
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.7e-14 87.0 62 59.7
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 3.8e-14 85.9 55 74.5
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 8.6e-14 84.7 125 40.0
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 3.6e-12 79.3 62 75.8
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.8e-11 77.0 56 64.3
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 1.8e-08 67.0 46 65.2


User provided reference genes

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