Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 0.0e+00 1283.1 650 100.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 1.4e-279 966.1 671 74.7
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.7e-266 922.5 667 71.7
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 5.1e-266 921.0 664 71.7
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 5.4e-260 901.0 658 70.2
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 2.3e-258 895.6 657 68.9
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 7.4e-257 890.6 670 68.7
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 1.6e-256 889.4 661 68.5
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 2.1e-256 889.0 667 69.9
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 6.2e-256 887.5 652 68.9
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 6.2e-256 887.5 667 67.8
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 4.0e-255 884.8 685 67.6
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.6e-254 882.1 667 67.2
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 7.6e-254 880.6 667 67.5
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 1.7e-253 879.4 650 67.7
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 8.4e-253 877.1 656 66.8
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 9.6e-249 863.6 652 66.9
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 9.0e-247 857.1 649 67.6
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 4.5e-246 854.7 709 64.0
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.3e-245 853.2 630 69.2
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 2.5e-244 849.0 653 66.5
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 6.7e-242 840.9 663 65.8
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 7.4e-241 837.4 657 66.5
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 4.8e-240 834.7 650 66.8
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 1.2e-238 830.1 658 65.5
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.5e-238 829.7 679 66.4
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 2.6e-238 828.9 658 64.9
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.4e-236 823.2 680 63.8
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 3.2e-236 822.0 737 60.9
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 2.7e-235 818.9 665 63.0
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 5.7e-233 811.2 645 65.6
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 2.8e-232 808.9 665 63.0
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.5e-230 803.1 618 67.8
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 4.5e-230 801.6 650 62.2
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 7.7e-230 800.8 659 62.4
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 9.4e-228 793.9 617 66.1
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 2.0e-225 786.2 692 60.5
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 7.2e-220 767.7 654 61.6
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.4e-215 753.4 651 60.8
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 3.5e-214 748.8 775 55.9
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.3e-213 746.9 662 62.2
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 3.3e-209 732.3 541 68.4
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.3e-208 730.3 685 57.8
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 3.1e-207 725.7 623 61.5
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 3.8e-205 718.8 656 58.7
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 2.3e-202 709.5 558 63.3
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 2.7e-198 696.0 647 57.0
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.4e-193 679.1 664 57.4
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 9.8e-193 677.6 667 57.0
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.4e-191 672.9 521 67.6
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.7e-190 669.5 664 57.1
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.8e-190 667.9 522 67.4
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.0e-189 667.5 551 64.4
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.5e-188 662.9 688 55.2
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.3e-188 662.5 688 55.1
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 4.1e-183 645.6 549 61.4
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 3.1e-178 629.4 654 48.6
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 1.7e-176 623.6 707 51.8
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.4e-175 619.8 720 51.0
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 3.5e-174 615.9 485 67.4
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 8.9e-170 601.3 500 64.8
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 7.5e-169 598.2 502 64.5
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 3.5e-166 589.3 467 65.5
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 8.6e-165 584.7 512 62.9
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 9.5e-164 581.3 488 64.5
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 4.0e-162 575.9 471 65.2
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 6.8e-162 575.1 459 64.3
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 3.4e-161 572.8 335 80.6
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 2.9e-160 569.7 543 58.9
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 1.6e-158 563.9 342 78.7
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 2.5e-156 556.6 408 70.1
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 5.3e-154 548.9 339 79.4
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 1.4e-151 540.8 465 63.0
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.5e-145 519.2 464 61.4
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.7e-142 510.0 464 60.8
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 3.0e-141 506.5 652 43.6
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.6e-139 500.7 544 52.4
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 4.9e-136 489.2 369 67.2
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 6.7e-133 478.8 451 59.6
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.0e-128 464.9 652 42.0
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 1.9e-124 450.7 646 40.7
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 5.1e-117 426.0 244 82.4
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 5.3e-98 362.8 257 69.6
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 6.8e-77 292.7 275 60.7
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.5e-76 291.6 287 58.9
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 9.8e-76 288.9 168 78.6
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 1.2e-73 282.0 173 76.9
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 6.6e-72 276.2 151 86.8
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 6.6e-72 276.2 173 75.7
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 1.5e-71 275.0 327 46.5
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 3.3e-71 273.9 173 74.0
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 8.9e-69 265.8 331 48.0
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 6.0e-65 253.1 174 71.3
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 4.3e-63 246.9 173 67.6
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 4.7e-62 243.4 173 65.9
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 5.8e-60 236.5 173 64.7
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 3.7e-59 233.8 173 63.0
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 4.9e-59 233.4 173 64.2
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 6.4e-59 233.0 173 62.4
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 8.3e-59 232.6 178 64.0
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 5.4e-58 229.9 175 62.9
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.2e-57 228.8 131 83.2
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 6.6e-56 223.0 602 29.4
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.7e-51 207.2 196 56.6
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 3.2e-50 204.1 104 89.4
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.2e-49 202.2 115 80.9
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 3.5e-49 200.7 100 92.0
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.5e-47 194.5 173 56.1
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 1.8e-45 188.3 173 54.9
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 2.0e-44 184.9 133 68.4
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 3.4e-44 184.1 133 68.4
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 6.4e-43 179.9 130 64.6
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 2.3e-40 171.4 130 64.6
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 3.3e-39 167.5 101 77.2
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 3.6e-38 164.1 870 22.9
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 5.3e-37 160.2 90 83.3
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 3.5e-33 147.5 137 52.6
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 7.9e-33 146.4 114 67.5
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.9e-26 125.2 77 72.7
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.6e-25 122.1 184 32.6
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 7.9e-25 119.8 118 55.9
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 6.7e-24 116.7 78 67.9
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 8.7e-24 116.3 198 43.9
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 5.6e-23 113.6 67 76.1
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.9e-19 101.3 74 60.8
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.1e-15 89.4 58 67.2
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.6e-14 85.5 56 67.9
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 3.4e-12 77.8 60 63.3
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 1.0e-11 76.3 51 62.7
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 1.8e-08 65.5 215 30.2
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 6.7e-08 63.5 41 68.3
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 6.7e-08 63.5 88 45.5
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 8.7e-08 63.2 249 26.1
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 1.5e-07 62.4 228 25.9
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 1.5e-07 62.4 251 22.7
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 1.9e-07 62.0 57 54.4
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 1.9e-07 62.0 225 24.0
AL8G16210 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 2.5e-07 61.6 237 24.5
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 3.3e-07 61.2 44 70.5
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 3.3e-07 61.2 258 24.0
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 7.4e-07 60.1 235 22.1
Glyma.08G354500 Glycine max HOM05D000836 ORTHO05D000709 9.7e-07 59.7 233 21.9
Psat0s4552g0080 Pisum sativum HOM05D002332 ORTHO05D002509 9.7e-07 59.7 223 20.2
QL10p004201 Quercus lobata HOM05D002332 ORTHO05D002509 9.7e-07 59.7 250 26.0
Glyma.18G171100 Glycine max HOM05D000836 ORTHO05D000709 1.3e-06 59.3 246 22.4
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 1.3e-06 59.3 88 43.2
Duzib084G0667 Durio zibethinus HOM05D002332 ORTHO05D002509 1.6e-06 58.9 250 23.6
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 1.6e-06 58.9 88 43.2
Phvul.008G125400 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 1.6e-06 58.9 234 23.5
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 2.2e-06 58.5 237 23.2
Gohir.D13G210800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 2.2e-06 58.5 233 23.2
Gorai.013G240700 Gossypium raimondii HOM05D000836 ORTHO05D000709 2.2e-06 58.5 233 23.2
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 2.8e-06 58.2 256 25.0
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 2.8e-06 58.2 256 25.0
Gohir.A13G206200 Gossypium hirsutum HOM05D000836 ORTHO05D000709 2.8e-06 58.2 235 23.0
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 2.8e-06 58.2 221 23.5
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 3.7e-06 57.8 313 21.7
MD15G1117100 Malus domestica HOM05D000836 ORTHO05D000709 3.7e-06 57.8 232 24.1
Thecc.03G126600 Theobroma cacao HOM05D002332 ORTHO05D002509 3.7e-06 57.8 247 23.9
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 4.8e-06 57.4 221 24.0
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 4.8e-06 57.4 151 29.1
Medtr7g016970 Medicago truncatula HOM05D002332 ORTHO05D002509 4.8e-06 57.4 252 21.0
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 4.8e-06 57.4 327 22.0
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 4.8e-06 57.4 221 23.5
MD15G1103400 Malus domestica HOM05D000836 ORTHO05D000709 6.3e-06 57.0 237 24.1
Phvul.001G054700 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 6.3e-06 57.0 224 23.7
PGR102G2938 Punica granatum HOM05D000836 ORTHO05D000709 6.3e-06 57.0 223 24.7
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 6.3e-06 57.0 249 23.3
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 8.2e-06 56.6 151 29.8
Migut.A00286 Erythranthe guttata HOM05D000836 ORTHO05D000709 8.2e-06 56.6 223 24.2


User provided reference genes

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