Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 0.0e+00 1141.3 618 100.0
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 0.0e+00 1105.9 623 95.0
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.5e-208 728.8 642 63.4
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 3.8e-194 682.2 661 59.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 8.4e-194 681.0 631 61.3
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 3.2e-177 625.9 657 56.2
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.8e-175 620.2 646 56.5
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 2.4e-172 609.8 632 53.8
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 3.1e-172 609.4 650 54.8
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 1.2e-168 597.4 640 54.2
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 3.9e-167 592.4 640 53.0
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 8.2e-165 584.7 650 51.5
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 4.1e-164 582.4 677 52.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 9.1e-164 581.3 640 53.0
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.3e-162 577.4 639 52.3
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 2.2e-162 576.6 645 52.9
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 3.8e-162 575.9 679 55.1
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.2e-161 572.4 641 52.9
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 4.2e-161 572.4 651 52.4
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 2.1e-160 570.1 644 53.3
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.7e-160 569.7 640 52.2
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 3.6e-160 569.3 629 52.6
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 8.0e-160 568.2 646 50.8
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.0e-159 567.8 644 53.3
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.8e-159 567.0 648 52.2
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.3e-159 566.6 647 52.1
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 6.7e-159 565.1 643 51.5
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 4.4e-158 562.4 648 52.2
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.5e-155 552.4 633 51.7
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.0e-154 551.2 640 51.6
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 3.8e-154 549.3 664 51.2
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.5e-153 546.6 598 53.2
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 6.1e-152 542.0 635 50.9
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 6.7e-151 538.5 620 50.5
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.7e-149 533.9 593 53.6
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 1.7e-149 533.9 649 52.9
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 4.8e-149 532.3 641 51.2
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.4e-148 530.8 657 49.0
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 7.0e-148 528.5 713 52.5
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.2e-147 527.7 713 52.2
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 4.5e-147 525.8 648 49.2
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 5.9e-147 525.4 543 56.7
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.3e-146 524.2 597 51.9
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 6.5e-146 521.9 615 50.9
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 1.1e-145 521.2 635 48.3
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 9.8e-142 508.1 652 47.2
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 9.8e-142 508.1 667 48.1
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 1.3e-141 507.7 663 47.5
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.1e-140 504.6 637 49.0
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 3.1e-140 503.1 650 48.6
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 7.0e-140 501.9 650 47.2
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 2.5e-137 493.4 656 46.5
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.6e-136 490.7 627 47.0
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 3.6e-136 489.6 651 47.9
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 8.0e-136 488.4 627 46.9
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 8.0e-136 488.4 638 47.5
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 8.9e-135 485.0 639 47.4
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 1.5e-134 484.2 620 48.2
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 2.8e-133 479.9 636 46.1
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 4.9e-133 479.2 659 48.3
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 2.9e-130 469.9 661 45.8
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 1.5e-129 467.6 649 45.1
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 4.3e-129 466.1 652 48.3
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 2.1e-128 463.8 630 47.3
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 6.8e-127 458.8 611 45.7
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 8.9e-127 458.4 655 44.7
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.2e-125 453.8 660 43.8
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 2.9e-125 453.4 626 46.6
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 4.9e-125 452.6 654 45.0
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 8.3e-125 451.8 656 44.1
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.1e-124 451.4 660 44.2
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.9e-124 450.7 665 44.2
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.9e-124 450.7 616 46.9
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 5.4e-124 449.1 490 51.8
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 7.0e-124 448.7 668 48.2
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 7.0e-124 448.7 668 48.2
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 1.0e-122 444.9 658 45.1
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.3e-122 444.5 628 44.6
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 3.3e-121 439.9 655 48.4
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 4.3e-121 439.5 660 43.5
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 9.5e-121 438.3 669 43.0
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 9.5e-121 438.3 669 43.0
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 4.7e-120 436.0 635 43.6
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 3.2e-116 423.3 650 43.1
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.7e-114 417.5 624 48.1
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 3.0e-114 416.8 653 42.3
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 8.6e-114 415.2 665 41.4
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 3.3e-113 413.3 665 41.2
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 5.6e-113 412.5 628 43.8
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 7.1e-108 395.6 448 52.0
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 2.1e-107 394.0 622 43.7
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 7.8e-107 392.1 448 50.2
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 9.5e-105 385.2 597 45.9
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.2e-102 378.3 640 41.1
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 4.4e-102 376.3 632 40.8
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 1.9e-100 370.9 631 41.0
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 7.8e-99 365.5 624 45.0
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 8.7e-98 362.1 553 41.2
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 1.8e-95 354.4 621 45.6
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 3.1e-95 353.6 534 44.2
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.1e-92 345.1 416 47.8
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 3.6e-88 330.1 360 52.8
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 1.1e-87 328.6 707 37.3
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 5.4e-84 316.2 604 38.9
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.2e-70 271.9 298 51.7
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 2.4e-63 247.7 278 46.8
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 6.9e-63 246.1 268 54.9
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.0e-50 205.7 309 49.5
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 2.6e-49 201.1 535 30.7
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 1.7e-45 188.3 488 33.2
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.8e-45 187.2 199 50.8
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 1.5e-44 185.3 265 44.5
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.1e-36 159.1 177 54.2
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 2.5e-36 157.9 129 62.8
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 2.8e-32 144.4 495 27.3
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.4e-31 141.4 114 63.2
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.9e-28 131.7 98 66.3
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.0e-27 126.3 153 49.7
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 1.0e-26 125.9 588 24.7
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 2.6e-25 121.3 502 27.3
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 5.7e-25 120.2 201 45.3
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.2e-24 118.2 124 57.3
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 3.7e-24 117.5 140 52.9
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 4.5e-22 110.5 134 46.3
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 2.3e-21 108.2 321 31.2
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.6e-21 106.3 75 64.0
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 1.1e-20 105.9 132 46.2
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 2.3e-18 98.2 195 39.5
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.0e-17 95.1 82 51.2
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 9.8e-17 92.8 137 45.3
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 9.2e-15 86.3 74 58.1
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 2.0e-14 85.1 78 64.1
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.9e-13 81.3 78 55.1
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 5.0e-13 80.5 128 40.6
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 5.6e-12 77.0 67 52.2
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 5.6e-12 77.0 120 44.2
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 6.8e-10 70.1 51 62.7


User provided reference genes

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