Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.2e-132 476.9 310 100.0
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 6.0e-108 394.8 314 85.7
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 1.1e-82 310.8 271 68.3
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 4.4e-58 229.2 197 67.0
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 3.1e-56 223.0 205 64.9
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.6e-52 209.5 207 60.4
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.8e-51 207.2 205 60.0
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 5.2e-51 205.7 198 60.6
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.2e-50 204.5 173 67.1
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.0e-50 203.8 208 59.6
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 3.4e-50 203.0 206 61.2
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 4.4e-50 202.6 211 57.8
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 9.8e-50 201.4 207 57.5
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.2e-49 200.3 202 57.9
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 2.9e-49 199.9 206 57.3
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 2.9e-49 199.9 196 62.2
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 3.7e-49 199.5 201 58.7
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 4.9e-49 199.1 205 58.5
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 6.4e-49 198.7 207 58.0
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 2.4e-48 196.8 203 57.6
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 3.2e-48 196.4 204 58.8
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 3.2e-48 196.4 206 58.3
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 5.4e-48 195.7 207 58.0
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 5.4e-48 195.7 184 62.5
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 7.0e-48 195.3 207 58.5
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 9.2e-48 194.9 206 57.3
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.2e-47 194.5 205 58.0
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 2.0e-47 193.7 164 63.4
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.7e-47 193.4 206 58.3
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 4.6e-47 192.6 175 61.7
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 4.6e-47 192.6 176 62.5
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 7.8e-47 191.8 205 57.1
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 7.8e-47 191.8 212 55.7
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 7.8e-47 191.8 208 57.7
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.7e-46 190.7 171 61.4
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.7e-46 190.7 207 57.5
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.3e-46 190.3 208 58.2
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 3.0e-46 189.9 207 57.5
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 5.0e-46 189.1 177 61.6
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 8.6e-46 188.3 211 55.5
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.1e-45 188.0 175 61.7
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.5e-45 187.6 206 53.9
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.5e-45 187.6 209 55.5
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 3.3e-45 186.4 200 54.5
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 4.3e-45 186.0 211 55.0
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 7.3e-45 185.3 206 56.8
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.3e-45 185.3 169 60.9
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.5e-45 184.9 171 60.8
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 1.2e-44 184.5 169 60.9
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 2.8e-44 183.3 207 55.1
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 2.8e-44 183.3 175 60.0
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 4.7e-44 182.6 174 60.3
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.1e-43 181.4 171 60.2
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.1e-43 181.4 168 58.3
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 1.4e-43 181.0 198 56.1
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 1.8e-43 180.6 169 59.8
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 5.2e-43 179.1 205 55.1
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 5.2e-43 179.1 174 58.6
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 6.8e-43 178.7 171 61.4
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 8.9e-43 178.3 195 52.8
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.5e-42 177.6 231 51.1
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.5e-42 177.6 162 60.5
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 2.6e-42 176.8 212 52.8
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 2.6e-42 176.8 202 52.0
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 5.8e-42 175.6 206 54.9
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 7.5e-42 175.3 199 53.8
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.8e-42 174.9 205 54.6
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 9.8e-42 174.9 165 61.2
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 9.8e-42 174.9 165 61.2
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 9.8e-42 174.9 165 61.2
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 8.3e-41 171.8 206 52.4
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.4e-40 171.0 178 56.2
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.9e-40 170.6 199 55.3
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 2.4e-40 170.2 181 52.5
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 7.0e-40 168.7 208 52.4
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 7.0e-40 168.7 204 47.5
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.2e-39 167.9 149 63.1
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 1.6e-39 167.5 209 49.8
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.6e-39 167.5 204 52.5
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 6.0e-39 165.6 261 41.4
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 6.0e-39 165.6 163 56.4
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.3e-38 164.5 155 57.4
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 2.3e-38 163.7 152 57.9
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.3e-38 163.7 183 53.0
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 2.3e-38 163.7 183 53.0
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 2.3e-38 163.7 199 49.7
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 2.3e-38 163.7 209 52.6
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 8.6e-38 161.8 184 53.8
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 8.6e-38 161.8 184 53.8
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 8.6e-38 161.8 198 53.5
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 1.9e-37 160.6 165 55.8
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 4.3e-37 159.5 165 53.3
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 4.3e-37 159.5 165 57.0
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.3e-37 159.5 205 52.2
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 5.6e-37 159.1 209 49.8
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.2e-36 157.9 159 55.3
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.2e-36 157.9 159 55.3
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-36 157.1 184 52.2
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.1e-36 157.1 201 47.8
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 2.8e-36 156.8 184 53.8
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 2.8e-36 156.8 235 46.0
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 3.6e-36 156.4 149 61.1
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.1e-35 154.8 206 47.6
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-35 154.5 200 49.0
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.4e-35 154.5 200 49.5
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 1.4e-35 154.5 120 65.8
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.3e-35 153.7 155 56.1
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 8.9e-35 151.8 223 47.5
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.2e-34 151.4 200 47.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 5.8e-34 149.1 141 58.2
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 3.2e-32 143.3 197 46.2
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 3.2e-32 143.3 117 68.4
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 4.1e-32 142.9 206 44.7
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 9.2e-32 141.7 180 50.0
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 9.2e-32 141.7 168 50.0
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.2e-31 141.4 202 45.0
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.1e-31 140.6 121 61.2
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 5.1e-30 136.0 187 46.0
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-29 134.8 162 51.2
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 2.5e-29 133.7 114 66.7
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.3e-29 132.9 171 50.9
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 2.1e-28 130.6 140 55.7
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 4.7e-28 129.4 168 47.0
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 4.7e-28 129.4 169 46.7
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 7.6e-26 122.1 173 46.8
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.7e-25 120.9 133 55.6
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 4.6e-23 112.8 103 60.2
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.7e-22 110.9 200 40.0
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 9.6e-21 105.1 166 41.6
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 9.0e-19 98.6 97 55.7
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 6.4e-17 92.4 167 36.5
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 8.4e-17 92.0 147 40.1
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.5e-15 86.7 82 58.5
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.6e-15 86.3 114 48.2
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 7.8e-15 85.5 83 56.6
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.7e-14 84.3 108 45.4
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 6.6e-14 82.4 66 63.6
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 6.2e-12 75.9 77 55.8
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 1.2e-10 71.6 121 35.5
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 5.8e-10 69.3 107 43.9
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 1.9e-08 64.3 54 63.0
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 3.2e-08 63.5 55 60.0
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 9.3e-08 62.0 110 37.3
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 2.1e-07 60.8 62 56.5
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 3.5e-07 60.1 179 29.1


User provided reference genes

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