Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 6403.2 3242 100.0
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 6257.2 3242 97.8
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 4204.4 3299 67.3
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 4071.5 3317 65.0
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3955.6 3295 63.9
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3859.3 3303 62.7
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3668.6 3300 60.2
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 3654.8 3298 60.3
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3623.2 3311 59.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3617.4 3282 59.7
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 3606.2 3282 59.8
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 3597.7 3291 59.6
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3582.3 3284 59.3
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3574.3 3295 59.2
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3563.9 3284 59.1
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3516.9 3286 58.6
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3514.9 3293 58.4
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3511.9 3289 58.1
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3511.9 3290 58.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3509.5 3271 58.7
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3506.8 3292 58.2
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3506.1 3278 58.8
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3496.4 3290 58.2
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3493.7 3296 58.2
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3490.7 3345 57.3
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3482.6 3297 57.8
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3479.1 3294 58.1
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3435.6 3422 56.9
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3419.8 3289 56.8
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3395.1 3288 57.3
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 3393.2 3287 56.9
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3376.3 3297 56.4
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 3373.6 3300 56.3
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3370.9 3283 57.4
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3365.9 3290 56.7
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 3363.2 3307 56.3
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3337.7 3291 56.1
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 3337.4 3300 56.3
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 3310.4 3291 55.8
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3310.0 3295 55.6
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3304.2 3355 55.4
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3300.4 3287 56.0
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 3236.4 2928 60.2
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3235.7 3294 54.1
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 3225.6 3300 54.2
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3217.6 3292 54.2
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3209.9 3294 54.0
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3192.9 3173 55.2
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3191.0 3257 54.6
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3190.6 3299 53.5
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3174.4 3310 54.4
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3169.8 3288 53.8
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3165.6 3292 54.6
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3149.0 3281 53.7
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3143.2 3293 53.7
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3142.4 3280 53.5
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3131.3 3282 53.7
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3129.7 3278 53.2
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3129.3 3280 53.2
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3118.2 3273 53.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3117.0 3273 53.2
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3117.0 3312 53.1
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3108.5 3278 53.1
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3107.0 3273 53.1
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3104.7 3273 53.1
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3085.4 3349 52.0
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3080.0 3265 53.1
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3070.0 3287 52.5
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3051.2 3299 52.7
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2956.0 2715 58.2
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 2913.6 3059 53.6
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2910.2 2442 62.1
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2779.2 3140 51.0
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2759.9 3269 48.6
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2702.2 3263 48.9
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2701.4 3043 51.3
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2673.7 2040 68.6
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2626.3 2453 56.7
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2510.7 3147 47.2
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2296.9 1995 61.6
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2253.0 3355 41.7
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2221.8 1612 72.0
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2180.2 2591 49.1
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 2102.0 2824 44.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2099.3 1709 64.3
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 2004.2 2418 48.1
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 2000.3 3295 39.5
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1993.0 3311 39.1
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1958.3 1516 68.3
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1956.0 2445 47.0
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1951.0 1797 59.9
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1913.3 1482 67.9
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1885.5 3330 38.0
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1835.1 1457 68.0
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1579.3 2178 44.2
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1453.0 1013 73.8
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1361.7 1528 49.9
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1327.8 1257 56.1
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1313.9 1026 68.1
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1287.7 1747 43.1
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1284.6 1568 48.3
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1235.7 983 65.3
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1119.0 974 62.1
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1102.0 850 67.5
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1079.7 851 65.2
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.6e-302 1043.9 844 64.8
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 5.8e-294 1016.1 3349 28.1
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 2.1e-283 981.1 1144 51.0
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 9.3e-260 902.5 892 53.9
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 1.8e-255 888.3 1531 37.9
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 2.2e-253 881.3 1510 40.2
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.5e-244 851.3 751 58.9
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 2.5e-220 771.5 1309 39.4
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.1e-195 688.7 440 78.4
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-191 676.4 408 83.6
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 2.1e-147 529.3 713 44.7
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 9.0e-146 523.9 818 40.5
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 6.3e-139 501.1 462 55.4
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 2.0e-137 496.1 863 38.1
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 5.9e-137 494.6 326 75.2
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 1.1e-135 490.3 832 39.9
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 2.5e-127 462.6 944 37.1
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 3.2e-119 435.6 270 79.6
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.1e-116 427.2 250 83.2
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 6.8e-109 401.4 535 46.2
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.8e-106 393.3 827 36.3
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 7.7e-105 387.9 412 52.7
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.9e-103 383.3 574 44.6
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.3e-96 360.5 819 32.4
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.7e-96 360.1 409 48.2
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 8.6e-96 357.8 822 32.8
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 2.0e-92 346.7 824 33.3
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-92 345.9 464 41.4
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 7.5e-92 344.7 318 59.4
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 2.3e-88 333.2 244 66.4
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 3.0e-88 332.8 217 78.3
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.5e-87 330.5 808 32.4
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 7.3e-87 328.2 310 58.4
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 2.8e-86 326.2 247 61.5
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 3.4e-84 319.3 337 56.1
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 6.6e-80 305.1 893 30.3
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 1.2e-78 300.8 353 46.2
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 5.6e-71 275.4 666 32.0
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 7.3e-71 275.0 295 52.5
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-70 274.2 335 48.4
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.5e-68 267.3 966 26.4
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.9e-67 262.3 683 29.6
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 4.0e-61 242.7 155 76.1
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.1e-53 218.0 322 39.1
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 3.1e-53 216.5 706 27.8
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 9.0e-53 214.9 396 36.1
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 8.7e-48 198.4 196 54.1
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 1.9e-31 144.1 118 64.4
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 7.2e-26 125.6 120 55.8
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 6.1e-25 122.5 82 76.8
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 6.7e-24 119.0 97 61.9
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 2.2e-22 114.0 70 81.4
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 3.7e-22 113.2 87 70.1
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.8e-21 110.9 111 47.7
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.1e-21 110.2 115 53.9
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 9.0e-21 108.6 76 75.0
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 5.9e-20 105.9 86 62.8
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 5.0e-19 102.8 109 55.0
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.0e-16 93.6 93 46.2
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 5.3e-13 82.8 65 60.0
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 1.6e-09 71.2 47 74.5
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 7.9e-09 68.9 144 33.3
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 1.8e-08 67.8 54 57.4
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 2.6e-07 63.9 69 49.3
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-06 61.2 46 67.4
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 2.2e-06 60.8 52 51.9


User provided reference genes

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