Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1934.5 987 100.0
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1900.6 987 98.5
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1498.4 992 77.3
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1434.5 990 73.3
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1434.1 1000 73.9
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1426.8 967 74.7
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1408.7 987 73.4
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1406.7 992 72.7
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1404.0 995 72.7
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1399.8 992 71.7
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1397.1 992 72.9
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1396.3 994 72.4
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1395.2 993 72.3
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1393.3 986 72.6
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1389.0 991 71.3
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1388.2 990 71.1
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1385.2 991 70.8
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1385.2 971 72.2
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1381.7 991 70.7
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1380.2 986 71.4
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1375.5 981 71.2
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1372.5 984 71.1
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1372.1 987 71.2
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1370.1 990 70.1
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1368.2 988 71.2
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1365.5 989 70.7
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1365.1 978 71.1
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1364.7 1004 70.7
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1361.7 985 71.3
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1359.0 990 70.0
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1357.0 972 71.6
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1356.7 989 70.8
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1356.7 993 69.7
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1355.9 987 70.2
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1353.2 978 70.7
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1352.4 977 70.6
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1352.0 972 71.5
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1350.9 979 70.4
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1350.9 985 69.3
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1350.5 996 69.4
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1350.1 968 71.8
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1348.6 987 69.8
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1348.6 987 69.8
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1346.6 994 69.7
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1346.3 982 70.4
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1345.9 981 69.9
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1345.9 991 69.4
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1345.1 981 69.9
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1344.7 977 70.4
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1344.3 986 70.7
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1341.3 956 71.1
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1340.5 982 69.7
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1339.7 984 69.2
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1337.8 984 69.3
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1337.0 995 70.7
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1336.6 987 69.5
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1336.2 993 69.1
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1335.1 1023 67.6
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1332.0 984 68.7
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1329.3 1017 68.2
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1327.8 990 69.0
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1324.7 982 68.3
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1323.5 909 73.8
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1319.7 1031 67.5
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1312.4 996 69.0
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1307.7 997 68.8
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 0.0e+00 1303.5 991 67.5
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1286.6 934 70.4
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 0.0e+00 1273.8 971 67.3
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1261.9 984 67.2
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1255.4 1000 66.2
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1213.0 981 65.4
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1208.0 981 65.3
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 1206.0 1035 61.4
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1204.5 938 67.5
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 0.0e+00 1185.2 990 63.6
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1180.6 994 63.2
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 0.0e+00 1171.4 900 68.3
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 0.0e+00 1149.4 871 66.5
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1114.8 863 65.9
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 0.0e+00 1102.8 803 71.2
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1099.3 952 61.9
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 0.0e+00 1082.8 958 57.8
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 3.0e-302 1042.0 970 55.7
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 2.5e-301 1038.9 749 68.2
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 4.8e-292 1008.1 968 56.0
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 5.3e-275 951.4 718 66.3
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 2.0e-269 932.9 711 66.2
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 4.4e-269 931.8 968 51.9
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.4e-253 879.0 661 68.8
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 2.9e-249 865.9 702 64.8
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.2e-247 860.5 682 66.4
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 4.6e-242 842.0 579 69.9
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 4.9e-236 822.0 975 49.1
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 9.5e-232 807.7 694 62.0
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 1.1e-214 751.1 483 76.0
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 4.9e-212 742.3 769 53.1
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 4.2e-211 739.2 619 65.4
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 4.0e-198 696.0 643 57.9
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 7.9e-194 681.8 566 65.7
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 4.1e-182 642.9 395 76.7
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 4.1e-158 563.1 977 37.6
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 5.2e-153 546.2 340 76.8
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 7.5e-144 515.8 404 65.1
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 5.0e-140 503.1 298 79.2
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 2.7e-125 454.1 980 33.5
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.5e-120 438.3 308 67.5
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.3e-116 425.2 416 56.0
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 1.4e-73 282.3 222 67.1
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 2.0e-72 278.5 232 67.2
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 2.2e-55 221.9 143 82.5
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 6.7e-52 210.3 154 67.5
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 6.7e-52 210.3 136 81.6
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 2.8e-50 204.9 109 84.4
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 9.8e-35 153.3 113 74.3
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 1.8e-25 122.5 137 56.2
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.1e-22 113.2 69 82.6
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.2e-21 109.8 69 81.2
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.2e-21 109.8 69 81.2
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.8e-21 108.6 69 81.2
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.8e-21 108.6 69 81.2
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.8e-21 108.6 69 81.2
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 3.6e-21 108.2 69 81.2
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 6.1e-21 107.5 69 79.7
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.8e-20 105.9 69 79.7
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.8e-20 105.9 82 68.3
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 1.8e-20 105.9 82 68.3
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.2e-20 104.4 69 79.7
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 2.6e-19 102.1 84 65.5
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 1.7e-18 99.4 70 67.1
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 2.2e-18 99.0 81 69.1
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 3.7e-18 98.2 80 65.0
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 6.4e-18 97.4 63 79.4
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 8.3e-18 97.1 82 63.4
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.5e-14 86.3 74 56.8
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 2.6e-11 75.5 349 22.1
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 5.8e-11 74.3 349 24.6
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 1.7e-10 72.8 351 23.4
AUR62003656 Chenopodium quinoa HOM05D006593 ORTHO05D008512 6.4e-10 70.9 356 25.3
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 1.9e-09 69.3 349 22.9
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 2.4e-09 68.9 358 24.9
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 2.4e-09 68.9 337 26.1
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 7.0e-09 67.4 345 24.9
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 9.2e-09 67.0 351 24.2
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 1.2e-08 66.6 71 50.7
MCO01G549 Micromonas commoda HOM05D004630 ORTHO05D005727 1.2e-08 66.6 181 27.1
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 1.6e-08 66.2 338 24.3
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 1.6e-08 66.2 71 50.7
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 1.6e-08 66.2 352 24.7
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 2.7e-08 65.5 36 91.7
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 3.5e-08 65.1 346 24.0
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 3.5e-08 65.1 348 23.9
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 3.5e-08 65.1 375 24.0
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 4.6e-08 64.7 347 23.1
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 4.6e-08 64.7 375 23.7
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 6.0e-08 64.3 40 87.5
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 6.0e-08 64.3 40 87.5
Hund16537 Selenicereus undatus HOM05D006593 ORTHO05D008512 6.0e-08 64.3 365 24.9
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 7.8e-08 63.9 348 23.3
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 7.8e-08 63.9 348 23.3
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 7.8e-08 63.9 369 22.8
AUR62017964 Chenopodium quinoa HOM05D006593 ORTHO05D008512 1.3e-07 63.2 207 27.1
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 1.3e-07 63.2 378 24.3
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.3e-07 63.2 348 23.3
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 1.3e-07 63.2 349 22.6
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 1.7e-07 62.8 375 23.7
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 3.0e-07 62.0 357 23.0
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 3.9e-07 61.6 210 27.6
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 5.0e-07 61.2 348 23.0
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 6.6e-07 60.8 321 24.9
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 6.6e-07 60.8 347 23.6
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 6.6e-07 60.8 349 22.6
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 1.1e-06 60.1 170 27.6
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 1.5e-06 59.7 58 50.0
Cpa.g.sc55.33 Carica papaya HOM05D006593 ORTHO05D008512 2.5e-06 58.9 367 22.3
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 4.3e-06 58.2 357 24.4
Lj2g0001674 Lotus japonicus HOM05D004630 ORTHO05D005727 4.3e-06 58.2 347 22.2
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 4.3e-06 58.2 374 23.8
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 9.5e-06 57.0 357 24.9


User provided reference genes

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