Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 2.6e-43 178.3 92 100.0
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 2.6e-43 178.3 92 100.0
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 3.6e-40 167.9 92 95.7
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 1.7e-37 159.1 90 91.1
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 2.8e-37 158.3 86 95.3
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 9.8e-22 106.7 96 60.4
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 9.8e-22 106.7 92 62.0
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 1.3e-21 106.3 96 61.5
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 2.4e-20 102.1 96 59.4
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 2.0e-19 99.0 94 58.5
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 3.5e-19 98.2 90 58.9
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.5e-19 97.8 96 57.3
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 6.5e-18 94.0 92 56.5
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.1e-17 93.2 94 55.3
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.9e-17 92.4 97 54.6
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.9e-17 92.4 97 52.6
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 2.5e-17 92.0 96 54.2
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.2e-17 91.3 92 58.7
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.2e-17 91.3 92 58.7
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 5.5e-17 90.9 91 58.2
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 7.2e-17 90.5 94 52.1
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 9.5e-17 90.1 95 52.6
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 9.5e-17 90.1 94 52.1
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.2e-16 89.7 96 56.2
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.2e-16 89.7 96 55.2
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.6e-16 89.4 97 52.6
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.6e-16 89.4 97 54.6
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.6e-16 89.4 98 54.1
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 3.6e-16 88.2 95 52.6
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 3.6e-16 88.2 95 51.6
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 8.0e-16 87.0 99 51.5
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 8.0e-16 87.0 98 52.0
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 1.4e-15 86.3 95 54.7
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.4e-15 86.3 91 57.1
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.8e-15 85.9 101 50.5
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 4.0e-15 84.7 95 50.5
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 6.8e-15 84.0 100 49.0
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 8.8e-15 83.6 98 50.0
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 8.8e-15 83.6 97 48.5
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.5e-14 82.8 96 50.0
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.5e-14 82.8 96 52.1
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 2.6e-14 82.0 97 48.5
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 3.4e-14 81.6 94 53.2
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 3.4e-14 81.6 94 51.1
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 4.4e-14 81.3 97 53.6
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 4.4e-14 81.3 96 53.1
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 5.7e-14 80.9 101 51.5
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 7.5e-14 80.5 97 52.6
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 7.5e-14 80.5 99 48.5
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 7.5e-14 80.5 96 49.0
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 7.5e-14 80.5 93 53.8
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 9.8e-14 80.1 93 51.6
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 9.8e-14 80.1 97 52.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.3e-13 79.7 101 49.5
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.3e-13 79.7 95 48.4
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.2e-13 79.0 97 49.5
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 2.2e-13 79.0 93 52.7
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 2.2e-13 79.0 96 50.0
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 2.8e-13 78.6 93 48.4
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 2.8e-13 78.6 96 47.9
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 3.7e-13 78.2 90 50.0
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 3.7e-13 78.2 90 50.0
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 4.9e-13 77.8 92 51.1
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 6.3e-13 77.4 93 50.5
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 6.3e-13 77.4 87 49.4
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 8.3e-13 77.0 89 50.6
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 1.1e-12 76.6 94 48.9
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 1.8e-12 75.9 94 52.1
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.8e-12 75.9 94 47.9
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.8e-12 75.9 92 52.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.4e-12 75.5 90 48.9
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 2.4e-12 75.5 93 51.6
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 4.1e-12 74.7 92 48.9
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 5.4e-12 74.3 89 47.2
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 7.0e-12 73.9 82 52.4
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.6e-11 72.8 93 51.6
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 2.7e-11 72.0 89 47.2
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 2.7e-11 72.0 97 48.5
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 4.5e-11 71.2 76 55.3
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 4.5e-11 71.2 96 45.8
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 7.8e-11 70.5 91 48.4
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.0e-10 70.1 94 47.9
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.3e-10 69.7 95 44.2
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 5.0e-10 67.8 87 47.1
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 5.0e-10 67.8 85 48.2
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 5.0e-10 67.8 92 45.7
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 6.6e-10 67.4 83 48.2
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 6.6e-10 67.4 83 48.2
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 8.6e-10 67.0 91 45.1
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 8.6e-10 67.0 89 43.8
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.1e-09 66.6 89 39.3
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 1.1e-09 66.6 48 68.8
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 1.5e-09 66.2 90 46.7
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 3.3e-09 65.1 91 45.1
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 3.3e-09 65.1 86 47.7
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 5.6e-09 64.3 96 44.8
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 5.6e-09 64.3 87 47.1
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 1.2e-08 63.2 92 40.2
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 1.6e-08 62.8 89 48.3
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 2.1e-08 62.4 93 40.9
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 2.8e-08 62.0 95 43.2
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 2.8e-08 62.0 88 43.2
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 2.8e-08 62.0 61 52.5
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.6e-08 61.6 91 47.3
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 6.1e-08 60.8 94 44.7
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.0e-07 60.1 91 42.9
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.0e-07 60.1 61 50.8
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 1.0e-07 60.1 52 59.6
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 1.0e-07 60.1 80 46.2
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 1.4e-07 59.7 84 39.3
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.4e-07 59.7 80 45.0
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 1.4e-07 59.7 72 47.2
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 1.8e-07 59.3 61 50.8
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.8e-07 59.3 61 50.8
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.8e-07 59.3 61 50.8
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.8e-07 59.3 56 57.1
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 1.8e-07 59.3 92 43.5
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.8e-07 59.3 89 43.8
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 3.0e-07 58.5 94 38.3
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 3.0e-07 58.5 97 43.3
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 5.2e-07 57.8 52 53.8
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 6.8e-07 57.4 85 43.5
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 6.8e-07 57.4 93 38.7
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 1.2e-06 56.6 72 44.4
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.2e-06 56.6 71 43.7
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 1.2e-06 56.6 40 67.5
Zm00001eb433450 Zea mays HOM05D006766 ORTHO05D008534 1.5e-06 56.2 91 42.9
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.0e-06 55.8 94 43.6
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 2.0e-06 55.8 40 65.0
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.6e-06 55.5 76 52.6
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 2.6e-06 55.5 70 45.7
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 2.6e-06 55.5 40 60.0
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 3.4e-06 55.1 68 47.1
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 4.4e-06 54.7 75 45.3
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 4.4e-06 54.7 29 79.3
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 4.4e-06 54.7 85 41.2
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 5.7e-06 54.3 48 54.2
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 7.5e-06 53.9 73 42.5
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 7.5e-06 53.9 75 44.0
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 7.5e-06 53.9 74 40.5
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 7.5e-06 53.9 81 44.4
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 7.5e-06 53.9 88 46.6
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 7.5e-06 53.9 65 43.1
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 7.5e-06 53.9 48 52.1
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 7.5e-06 53.9 73 43.8
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 9.8e-06 53.5 69 44.9


User provided reference genes

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