Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 7.6e-129 463.8 221 100.0
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 8.1e-123 443.7 219 94.1
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 3.1e-122 441.8 219 93.6
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 5.6e-108 394.4 219 82.2
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 6.2e-107 391.0 219 80.8
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 3.1e-106 388.7 218 81.2
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 2.6e-105 385.6 219 80.4
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 2.9e-104 382.1 219 79.9
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 4.9e-104 381.3 219 78.5
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 6.4e-104 380.9 219 78.5
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 2.4e-103 379.0 220 78.2
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 4.2e-103 378.3 219 77.6
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 1.2e-102 376.7 219 77.6
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 2.1e-102 375.9 219 76.3
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 2.7e-102 375.6 219 77.2
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 1.0e-101 373.6 221 75.1
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.0e-101 373.6 219 76.7
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 1.3e-101 373.2 219 79.0
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 6.7e-101 370.9 219 78.5
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 8.7e-101 370.5 219 77.6
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 8.7e-101 370.5 219 76.7
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 8.7e-101 370.5 219 76.7
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 1.1e-100 370.2 220 77.3
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 1.5e-100 369.8 221 78.3
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 1.9e-100 369.4 221 76.5
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 2.5e-100 369.0 219 77.6
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 2.5e-100 369.0 219 77.6
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 2.5e-100 369.0 219 76.3
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 3.3e-100 368.6 219 77.6
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 4.3e-100 368.2 219 78.1
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 5.6e-100 367.9 219 77.2
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 7.4e-100 367.5 219 79.0
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 1.3e-99 366.7 219 77.2
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 1.6e-99 366.3 219 78.1
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 1.6e-99 366.3 219 76.3
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 2.1e-99 365.9 221 75.6
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 2.8e-99 365.5 220 77.3
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 3.7e-99 365.2 219 76.7
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 3.7e-99 365.2 221 75.1
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 3.7e-99 365.2 219 76.3
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 4.8e-99 364.8 219 78.1
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 4.8e-99 364.8 219 75.3
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 8.1e-99 364.0 219 74.4
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 8.1e-99 364.0 219 76.3
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 1.1e-98 363.6 219 75.3
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 1.1e-98 363.6 219 76.3
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 1.4e-98 363.2 219 74.4
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 1.4e-98 363.2 219 74.4
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 1.4e-98 363.2 219 76.7
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 1.8e-98 362.8 219 75.8
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 1.8e-98 362.8 245 69.0
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 3.1e-98 362.1 219 75.3
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 4.0e-98 361.7 219 74.9
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 6.9e-98 360.9 214 75.7
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 1.2e-97 360.1 219 74.4
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 2.6e-97 359.0 219 74.9
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 5.8e-97 357.8 220 74.5
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 1.0e-96 357.1 221 73.8
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 6.5e-96 354.4 219 73.5
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 6.5e-96 354.4 221 74.2
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 1.1e-95 353.6 223 74.0
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 1.4e-95 353.2 228 71.5
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 1.4e-95 353.2 219 73.1
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 2.5e-95 352.4 219 71.2
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 2.5e-95 352.4 221 71.0
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 4.2e-95 351.7 223 72.2
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 9.3e-95 350.5 211 76.3
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 1.6e-94 349.7 221 71.0
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 2.1e-94 349.4 219 71.2
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 3.5e-94 348.6 219 74.0
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 4.6e-94 348.2 211 76.3
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 3.0e-93 345.5 219 71.2
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 6.7e-93 344.4 217 73.3
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 1.9e-92 342.8 223 72.6
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 1.9e-92 342.8 223 72.6
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 2.5e-92 342.4 233 67.8
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 5.7e-92 341.3 223 72.2
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 1.3e-91 340.1 221 71.0
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 1.6e-91 339.7 225 72.0
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 8.2e-91 337.4 223 71.3
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 1.4e-90 336.7 219 70.8
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.2e-89 333.6 299 55.5
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 2.0e-89 332.8 221 70.6
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 2.0e-89 332.8 219 68.9
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 2.6e-89 332.4 223 70.4
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 3.4e-89 332.0 223 70.0
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 1.0e-88 330.5 223 69.5
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 1.0e-88 330.5 222 72.1
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 1.0e-88 330.5 223 70.0
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 2.9e-88 328.9 223 69.1
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 5.0e-88 328.2 223 69.5
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 4.2e-87 325.1 221 65.6
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 4.2e-87 325.1 229 65.9
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 1.2e-86 323.6 223 68.2
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 2.7e-86 322.4 238 66.0
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 7.9e-86 320.9 238 65.1
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 3.9e-85 318.5 215 66.0
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 2.5e-84 315.8 221 62.9
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 1.0e-80 303.9 219 63.9
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 2.9e-80 302.4 219 65.3
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 4.2e-79 298.5 219 61.6
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 5.5e-79 298.1 219 61.2
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 3.3e-76 288.9 218 61.5
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 4.8e-75 285.0 169 77.5
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 7.2e-71 271.2 214 54.2
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 2.1e-70 269.6 214 54.2
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 2.7e-70 269.2 214 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 1.8e-69 266.5 215 53.5
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 3.0e-69 265.8 214 54.7
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 4.8e-67 258.5 213 52.6
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 2.3e-61 239.6 219 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.5e-57 225.7 218 45.0
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 2.6e-52 209.5 132 76.5
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 8.3e-51 204.5 217 44.7
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 3.8e-48 195.7 214 46.3
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 9.5e-47 191.0 108 76.9
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 2.7e-46 189.5 209 41.1
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 2.9e-40 169.5 108 77.8
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.2e-38 164.1 89 78.7
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 8.9e-37 157.9 186 47.8
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 3.7e-35 152.5 87 71.3
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 8.3e-35 151.4 117 60.7
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 2.0e-33 146.7 89 73.0
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 4.4e-28 129.0 75 74.7
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 9.8e-28 127.9 98 60.2
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 1.4e-26 124.0 74 74.3
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 1.7e-24 117.1 74 70.3
Nitab4.5_0001287g0150 Nicotiana tabacum HOM05D003127 ORTHO05D003709 1.1e-21 107.8 181 33.1
CAN.G574.32 Capsicum annuum HOM05D003127 ORTHO05D003709 8.9e-21 104.8 181 32.6
Nitab4.5_0004677g0020 Nicotiana tabacum HOM05D003127 ORTHO05D003709 8.9e-21 104.8 181 32.6
CAN.G1245.19 Capsicum annuum HOM05D003127 ORTHO05D003709 1.2e-20 104.4 181 32.6
Manes.09G047500 Manihot esculenta HOM05D003127 ORTHO05D003709 1.2e-20 104.4 181 32.6
Nitab4.5_0000020g0330 Nicotiana tabacum HOM05D003127 ORTHO05D003709 1.2e-20 104.4 181 32.6
PGR142G1396 Punica granatum HOM05D003127 ORTHO05D003709 1.2e-20 104.4 181 32.6
Sc20g0006650 Simmondsia chinensis HOM05D003127 ORTHO05D003709 1.2e-20 104.4 181 33.1
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 1.2e-20 104.4 181 32.6
Solyc10g082030.2 Solanum lycopersicum HOM05D003127 ORTHO05D003709 1.5e-20 104.0 181 32.6
Sopen10g032540 Solanum pennellii HOM05D003127 ORTHO05D003709 1.5e-20 104.0 181 32.6
PGSC0003DMG400016387 Solanum tuberosum HOM05D003127 ORTHO05D003709 1.5e-20 104.0 182 33.5
PGSC0003DMG400028238 Solanum tuberosum HOM05D003127 ORTHO05D003709 1.5e-20 104.0 181 32.6
Aa31LG3G5040 Aethionema arabicum HOM05D003127 ORTHO05D003709 2.0e-20 103.6 181 32.6
Nitab4.5_0010740g0010 Nicotiana tabacum HOM05D003127 ORTHO05D003709 2.0e-20 103.6 181 32.6
Peaxi162Scf00211g01734 Petunia axillaris HOM05D003127 ORTHO05D003709 3.4e-20 102.8 181 32.0
Solyc01g007740.4 Solanum lycopersicum HOM05D003127 ORTHO05D003709 3.4e-20 102.8 181 32.0
AUR62037040 Chenopodium quinoa HOM05D003127 ORTHO05D003709 4.4e-20 102.4 181 32.0
Dinv31747 Davidia involucrata HOM05D003127 ORTHO05D003709 4.4e-20 102.4 181 32.0
HanXRQChr13g0398251 Helianthus annuus HOM05D003127 ORTHO05D003709 4.4e-20 102.4 181 32.0
AUR62006270 Chenopodium quinoa HOM05D003127 ORTHO05D003709 5.8e-20 102.1 181 32.0
Hma1.2p1_1442F.1_g283750 Hydrangea macrophylla HOM05D003127 ORTHO05D003709 5.8e-20 102.1 181 32.0
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 9.8e-20 101.3 181 31.5
Cpa.g.sc104.57 Carica papaya HOM05D003127 ORTHO05D003709 9.8e-20 101.3 181 32.0
Phvul.001G194100 Phaseolus vulgaris HOM05D003127 ORTHO05D003709 9.8e-20 101.3 181 32.0
Phvul.001G194200 Phaseolus vulgaris HOM05D003127 ORTHO05D003709 9.8e-20 101.3 181 32.0
THA.LOC104809959 Tarenaya hassleriana HOM05D003127 ORTHO05D003709 9.8e-20 101.3 181 31.5
Atru.chr8.1389 Acer truncatum HOM05D003127 ORTHO05D003709 1.3e-19 100.9 181 30.9
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 1.3e-19 100.9 62 75.8
SGA_v2.0_scaffold35G14000 Striga asiatica HOM05D003127 ORTHO05D003709 1.3e-19 100.9 181 32.0
Ciclev10012459m.g Citrus clementina HOM05D003127 ORTHO05D003709 1.7e-19 100.5 181 32.0
Prupe.7G097900 Prunus persica HOM05D003127 ORTHO05D003709 1.7e-19 100.5 181 31.5
VMungo1383G0691 Vigna mungo HOM05D003127 ORTHO05D003709 2.2e-19 100.1 181 31.5
Ca_14603_v3 Cicer arietinum L. HOM05D003127 ORTHO05D002183 4.9e-19 99.0 181 31.5
Hund03845 Selenicereus undatus HOM05D003127 ORTHO05D003709 4.9e-19 99.0 181 32.0
Potri.006G204900 Populus trichocarpa HOM05D003127 ORTHO05D003709 8.3e-19 98.2 181 31.5
arahy.Tifrunner.gnm1.ann1.3IK0CY Arachis hypogaea HOM05D003127 ORTHO05D003709 1.4e-18 97.4 181 31.5
arahy.Tifrunner.gnm1.ann1.PKQH6A Arachis hypogaea HOM05D003127 ORTHO05D003709 1.4e-18 97.4 181 31.5
MD12G1037300 Malus domestica HOM05D003127 ORTHO05D003709 4.1e-18 95.9 182 30.2
MD14G1036400 Malus domestica HOM05D003127 ORTHO05D003709 2.7e-17 93.2 184 30.4
MCO10G030 Micromonas commoda HOM05D003127 ORTHO05D003709 5.6e-15 85.5 181 29.8
PRCOL_00002734 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 7.3e-15 85.1 198 28.8
Duzib093G1492 Durio zibethinus HOM05D003127 ORTHO05D003709 8.9e-13 78.2 116 33.6
Sabra06G0157900 Salix brachista HOM05D003127 ORTHO05D003709 1.2e-12 77.8 120 31.7
Cre17.g743897 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 1.5e-12 77.4 205 25.9
SEGI_00958 Sequoiadendron giganteum HOM05D003127 ORTHO05D003709 9.9e-12 74.7 101 35.6
Cre06.g257601 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 1.7e-11 73.9 152 29.6
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 1.7e-11 73.9 160 28.8
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 1.2e-09 67.8 39 74.4
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 2.1e-09 67.0 74 45.9
Lalb_Chr13g0293501 Lupinus albus HOM05D005985 ORTHO05D007403 5.6e-07 58.9 45 62.2
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 7.3e-07 58.5 157 21.7
FvH4_4g15322 Fragaria vesca HOM05D003127 ORTHO05D000062 7.3e-07 58.5 76 35.5
FvH4_4g15580 Fragaria vesca HOM05D003127 ORTHO05D003768 4.7e-06 55.8 74 33.8


User provided reference genes

Program Settings