Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1790.8 875 100.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1332.0 875 73.1
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1302.3 875 71.1
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1281.5 875 70.5
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 875 70.6
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1276.9 874 69.0
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1266.5 873 68.8
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1265.4 875 69.4
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 874 69.2
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1253.0 875 68.9
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 873 68.4
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1250.3 875 68.8
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 875 69.1
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1246.9 874 68.8
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1246.9 872 68.2
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 878 68.1
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 872 69.0
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 871 68.0
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 882 67.5
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1237.2 872 67.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1236.1 871 68.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1235.7 872 67.5
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1234.9 878 67.2
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1234.6 875 66.7
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1233.4 876 68.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1231.5 877 66.5
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1230.7 872 67.8
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1230.7 876 67.2
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 874 67.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 872 67.3
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 880 67.5
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 874 67.3
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1224.9 870 67.4
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 883 66.7
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1224.2 872 67.1
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 873 66.9
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 872 67.1
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 872 66.6
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1220.3 872 66.6
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1219.9 872 67.1
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1218.4 874 66.8
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1217.2 871 66.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 873 65.6
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 872 67.0
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1215.7 871 66.6
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 874 66.1
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 871 66.9
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 866 65.9
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1211.4 875 65.9
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1210.3 872 66.1
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1206.0 875 65.7
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1204.5 871 65.8
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1202.6 874 67.2
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 874 65.7
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 871 66.0
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 872 65.8
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1197.2 874 65.7
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1194.1 874 64.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1192.2 897 64.1
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 874 65.4
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 877 65.0
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1191.4 882 65.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1191.0 873 64.7
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1190.6 872 66.3
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1189.5 876 64.7
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1187.2 890 64.7
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1184.5 871 64.8
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1184.5 872 65.1
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1183.7 871 65.1
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 883 65.0
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1179.5 872 65.6
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1170.2 873 65.4
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1168.3 874 64.2
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1166.4 874 63.4
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1164.4 878 63.6
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1164.1 878 63.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1163.7 873 64.3
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1162.9 877 64.1
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1162.1 871 64.6
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1160.2 874 63.6
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1159.8 874 63.6
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1159.8 874 63.5
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1159.8 871 65.3
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1157.5 870 64.0
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1157.5 831 66.5
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1155.2 874 63.7
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1152.5 875 63.0
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1145.6 875 62.5
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1139.4 873 62.8
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1135.2 859 63.9
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.4e-306 1056.2 870 58.7
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 1.7e-304 1049.3 760 67.2
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 2.3e-298 1028.9 693 69.3
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 4.9e-296 1021.1 867 55.6
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.7e-293 1012.7 863 58.5
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.3e-292 1008.4 649 73.0
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 3.3e-284 981.9 877 54.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.2e-283 979.9 870 58.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 5.8e-281 971.1 696 65.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 9.5e-276 953.7 869 53.6
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.2e-270 936.8 873 51.3
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 5.3e-210 735.3 783 47.8
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 7.3e-159 565.5 390 68.7
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 4.4e-156 556.2 481 58.8
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.5e-140 504.6 463 54.0
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.3e-112 411.0 370 55.7
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 1.3e-86 325.5 307 55.0
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.4e-69 268.9 204 63.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 5.9e-68 263.5 168 72.6
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 5.4e-53 213.8 175 60.6
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.2e-52 212.6 176 60.2
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 7.1e-45 186.8 200 50.5
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 2.2e-38 165.2 216 43.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 2.4e-29 135.2 150 45.3
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.2e-29 134.8 111 58.6
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.9e-27 127.9 83 69.9
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 4.5e-23 114.4 90 63.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.7e-22 112.5 87 64.4
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.4e-21 109.4 73 67.1
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.4e-21 108.6 69 72.5
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 6.2e-17 94.0 105 48.6
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.9e-14 85.1 330 25.5
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.9e-13 82.4 197 27.4
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 2.3e-11 75.5 330 25.2
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 8.7e-11 73.6 250 24.8
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.5e-10 72.8 297 24.6
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.9e-10 72.4 82 48.8
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 9.6e-10 70.1 318 22.6
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.1e-09 68.9 302 26.2
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 4.8e-09 67.8 318 23.0
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 1.4e-08 66.2 95 41.1
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.4e-08 65.5 198 26.3
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 9.0e-08 63.5 297 24.2
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.6e-07 62.0 259 23.9
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.3e-06 59.7 34 73.5
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 2.2e-06 58.9 217 24.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 3.8e-06 58.2 299 27.4
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 8.4e-06 57.0 170 25.9


User provided reference genes

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