Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 5.8e-155 550.8 273 100.0
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 2.3e-151 538.9 273 97.8
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 2.1e-96 356.3 274 63.9
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 2.0e-91 339.7 278 61.9
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 8.5e-90 334.3 283 59.0
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.0e-87 327.4 275 60.4
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.4e-87 327.0 272 61.0
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 3.0e-87 325.9 271 59.0
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 5.2e-87 325.1 270 59.6
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.0e-86 323.2 276 59.4
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 3.4e-86 322.4 276 58.7
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 5.7e-86 321.6 280 57.5
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 1.7e-85 320.1 274 58.8
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.2e-85 319.7 270 58.5
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.7e-85 318.9 270 58.1
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 6.3e-85 318.2 274 58.0
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.4e-84 317.0 274 58.4
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 4.1e-84 315.5 274 56.2
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 4.1e-84 315.5 275 55.6
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 9.1e-84 314.3 285 57.2
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 1.2e-83 313.9 279 57.3
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 1.6e-83 313.5 283 57.6
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 2.7e-83 312.8 268 57.8
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 2.7e-83 312.8 277 56.7
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 2.7e-83 312.8 275 57.1
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 3.5e-83 312.4 279 58.4
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 5.9e-83 311.6 274 56.9
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 5.9e-83 311.6 273 56.4
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 5.9e-83 311.6 280 56.4
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 2.3e-82 309.7 266 56.8
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 2.9e-82 309.3 271 55.7
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 3.8e-82 308.9 274 57.3
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 5.0e-82 308.5 273 58.2
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 5.0e-82 308.5 278 57.6
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 6.6e-82 308.1 277 57.0
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 8.6e-82 307.8 271 56.1
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 1.9e-81 306.6 272 55.1
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 1.9e-81 306.6 275 55.3
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 2.5e-81 306.2 266 57.9
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 2.5e-81 306.2 266 57.9
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.3e-81 305.8 267 57.7
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 5.5e-81 305.1 266 57.5
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 5.5e-81 305.1 281 55.5
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 1.2e-80 303.9 266 56.0
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 1.6e-80 303.5 266 57.9
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 1.6e-80 303.5 266 57.1
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 2.1e-80 303.1 263 57.8
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 2.1e-80 303.1 274 55.5
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 2.1e-80 303.1 275 55.3
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 2.8e-80 302.8 272 55.1
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 2.8e-80 302.8 270 55.6
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 3.6e-80 302.4 266 55.6
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 1.0e-79 300.8 282 53.2
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 1.4e-79 300.4 266 55.3
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.4e-79 300.4 284 54.9
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.4e-79 300.4 280 56.1
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.4e-79 300.4 284 54.9
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 2.3e-79 299.7 266 55.3
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 3.0e-79 299.3 273 53.1
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.0e-79 299.3 280 55.7
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.0e-79 299.3 266 57.5
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 4.0e-79 298.9 270 54.1
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 5.2e-79 298.5 266 54.9
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 8.9e-79 297.7 275 56.4
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 8.9e-79 297.7 266 57.1
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.2e-78 297.4 266 54.9
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.2e-78 297.4 268 54.1
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 1.5e-78 297.0 273 54.2
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 1.5e-78 297.0 282 56.4
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.5e-78 297.0 282 54.6
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 3.4e-78 295.8 268 53.7
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 5.7e-78 295.0 267 55.4
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 9.8e-78 294.3 281 52.7
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 1.7e-77 293.5 267 54.3
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 3.7e-77 292.4 262 55.3
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 8.3e-77 291.2 284 54.2
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 8.3e-77 291.2 278 56.1
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 1.1e-76 290.8 270 51.9
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.8e-76 290.0 225 62.7
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 3.2e-76 289.3 301 50.5
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 4.1e-76 288.9 273 53.1
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 4.1e-76 288.9 266 53.8
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 4.1e-76 288.9 225 63.6
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 5.4e-76 288.5 245 58.8
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.4e-76 288.5 266 56.0
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 9.2e-76 287.7 331 47.1
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 1.6e-75 287.0 276 54.0
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 2.7e-75 286.2 274 51.8
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 3.5e-75 285.8 275 51.3
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 3.5e-75 285.8 275 51.3
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-74 284.3 295 49.2
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.3e-74 283.9 270 51.9
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 2.3e-74 283.1 272 54.8
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 5.0e-74 282.0 275 53.5
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 5.6e-73 278.5 270 53.3
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.6e-72 276.9 271 52.0
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 2.8e-72 276.2 252 56.7
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 4.7e-72 275.4 183 68.9
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 3.1e-71 272.7 292 47.6
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 3.1e-71 272.7 191 69.1
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 4.0e-71 272.3 228 58.3
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 5.2e-71 271.9 211 63.0
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 5.2e-71 271.9 269 49.8
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.4e-70 269.2 181 70.7
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 9.8e-70 267.7 278 48.9
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 4.9e-69 265.4 276 48.6
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 6.4e-69 265.0 281 51.2
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 1.4e-68 263.8 230 55.7
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 3.2e-68 262.7 209 62.7
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 2.0e-67 260.0 295 48.8
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 3.5e-67 259.2 270 48.5
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.7e-66 256.9 218 57.3
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 2.3e-66 256.5 234 55.6
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 3.0e-66 256.1 214 62.1
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 2.3e-63 246.5 215 55.8
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 4.4e-62 242.3 254 50.8
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.2e-61 240.0 257 49.8
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.9e-60 236.9 213 57.3
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.4e-60 235.3 227 51.5
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 5.4e-60 235.3 188 60.6
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.5e-59 232.6 217 57.6
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.3e-58 229.9 192 57.8
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 4.7e-56 222.2 208 53.8
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 2.7e-51 206.5 276 42.0
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.0e-50 204.5 159 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 8.1e-48 194.9 222 43.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 6.4e-37 158.7 267 37.5
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.2e-35 154.5 114 63.2
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 2.1e-35 153.7 335 29.6
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 3.5e-35 152.9 194 45.9
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 7.8e-35 151.8 194 45.4
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 7.3e-33 145.2 113 61.1
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 2.8e-32 143.3 117 59.0
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 1.1e-31 141.4 270 32.2
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 1.2e-30 137.9 150 48.0
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.0e-30 137.1 96 65.6
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 3.8e-21 106.3 93 55.9
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.5e-19 99.8 123 40.7
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.6e-19 99.4 84 54.8
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 4.6e-19 99.4 132 39.4
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 1.4e-15 87.8 191 29.3
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 2.0e-14 84.0 204 33.3
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 5.5e-12 75.9 67 53.7
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 3.9e-10 69.7 95 40.0
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 5.7e-09 65.9 205 26.8
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 9.7e-09 65.1 45 68.9
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 1.6e-08 64.3 115 30.4
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 2.8e-08 63.5 69 42.0
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 1.4e-07 61.2 109 33.9
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 2.4e-07 60.5 56 51.8
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 4.1e-07 59.7 44 59.1
Gohir.D02G078533 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.5e-06 57.8 61 57.4
Gorai.012G060300 Gossypium raimondii HOM05D004903 ORTHO05D036089 2.6e-06 57.0 33 81.8
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 3.4e-06 56.6 42 71.4
Gohir.D04G053733 Gossypium hirsutum HOM05D004903 ORTHO05D036089 4.5e-06 56.2 30 86.7
Gohir.D05G314400 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.5e-06 56.2 30 86.7
Gohir.D06G112500 Gossypium hirsutum HOM05D004903 ORTHO05D036089 4.5e-06 56.2 30 86.7
Gohir.D07G051800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.5e-06 56.2 30 86.7
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 4.5e-06 56.2 30 86.7


User provided reference genes

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