Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 1.0e-131 474.9 240 100.0
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 6.6e-118 429.1 240 90.0
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 2.4e-51 208.0 242 51.7
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.5e-48 198.7 248 48.4
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 4.8e-44 183.7 171 55.6
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 4.8e-28 130.6 133 48.1
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 3.8e-25 120.9 141 42.6
ATR0006G044 Amborella trichopoda HOM05D004079 ORTHO05D009709 9.2e-19 99.8 150 40.7
SEGI_18114 Sequoiadendron giganteum HOM05D007686 ORTHO05D009709 1.2e-15 89.4 96 39.6
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 7.5e-13 80.1 53 67.9
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 9.8e-13 79.7 60 63.3
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 1.3e-12 79.3 53 67.9
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 1.7e-12 79.0 55 65.5
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.2e-12 78.6 64 54.7
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 2.9e-12 78.2 53 66.0
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 3.7e-12 77.8 52 67.3
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 6.4e-12 77.0 52 67.3
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.1e-11 76.3 52 69.2
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 1.1e-11 76.3 54 68.5
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 1.1e-11 76.3 53 69.8
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 2.4e-11 75.1 49 65.3
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 4.1e-11 74.3 53 64.2
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 4.1e-11 74.3 52 65.4
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 5.4e-11 73.9 53 64.2
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 5.4e-11 73.9 52 65.4
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 9.2e-11 73.2 52 69.2
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 9.2e-11 73.2 51 66.7
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 1.2e-10 72.8 54 63.0
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 1.6e-10 72.4 54 61.1
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.0e-10 72.0 52 59.6
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 2.7e-10 71.6 52 65.4
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 2.7e-10 71.6 53 64.2
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 3.5e-10 71.2 57 57.9
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 3.5e-10 71.2 53 62.3
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 4.6e-10 70.9 52 59.6
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 4.6e-10 70.9 52 59.6
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 4.6e-10 70.9 54 59.3
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 4.6e-10 70.9 50 66.0
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 6.0e-10 70.5 52 63.5
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 6.0e-10 70.5 58 56.9
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 7.8e-10 70.1 52 63.5
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 7.8e-10 70.1 57 59.6
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 7.8e-10 70.1 50 64.0
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 7.8e-10 70.1 51 60.8
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 1.3e-09 69.3 57 61.4
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 1.3e-09 69.3 53 62.3
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 1.3e-09 69.3 52 57.7
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 1.3e-09 69.3 52 57.7
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 1.7e-09 68.9 52 61.5
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 1.7e-09 68.9 49 63.3
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 3.0e-09 68.2 48 66.7
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 5.0e-09 67.4 52 59.6
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 8.6e-09 66.6 42 71.4
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 8.6e-09 66.6 51 62.7
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 8.6e-09 66.6 51 62.7
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 8.6e-09 66.6 45 62.2
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 1.1e-08 66.2 45 66.7
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 1.1e-08 66.2 46 63.0
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 1.1e-08 66.2 46 63.0
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 1.9e-08 65.5 51 58.8
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.9e-08 65.5 45 60.0
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 3.3e-08 64.7 51 60.8
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 2.8e-07 61.6 52 61.5
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 4.7e-07 60.8 52 55.8
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 8.0e-07 60.1 175 26.9
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 8.0e-07 60.1 52 55.8
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 8.0e-07 60.1 52 53.8
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 1.1e-06 59.7 149 26.2
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 3.1e-06 58.2 114 28.9
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 3.1e-06 58.2 52 53.8
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 4.0e-06 57.8 198 25.8
TPR.G11874 Trifolium pratense HOM05D004079 ORTHO05D005437 4.0e-06 57.8 88 33.0
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 5.2e-06 57.4 52 51.9
TPR.G30149 Trifolium pratense HOM05D000424 ORTHO05D000355 5.2e-06 57.4 192 26.6
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 6.8e-06 57.0 118 29.7
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 6.8e-06 57.0 126 28.6
Aqoxy6G00861 Aquilegia oxysepala HOM05D007202 ORTHO05D009125 8.9e-06 56.6 135 31.9
CiPaw.06G061800 Carya illinoinensis HOM05D007202 ORTHO05D009125 8.9e-06 56.6 105 30.5
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 8.9e-06 56.6 118 27.1
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 8.9e-06 56.6 117 28.2
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 8.9e-06 56.6 117 28.2


User provided reference genes

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