Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.8e-72 275.8 139 100.0
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.0e-22 110.5 139 48.2
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 2.3e-22 109.4 138 45.7
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 3.6e-20 102.1 139 46.0
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 1.5e-18 96.7 135 40.0
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 5.8e-18 94.7 125 47.2
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 5.8e-18 94.7 139 37.4
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 1.3e-17 93.6 129 42.6
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.2e-17 92.8 141 37.6
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 3.8e-17 92.0 140 40.7
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 4.9e-17 91.7 139 41.7
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 1.4e-16 90.1 99 43.4
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 1.9e-16 89.7 139 38.8
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.9e-16 89.7 138 38.4
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 2.4e-16 89.4 83 51.8
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 3.2e-16 89.0 143 40.6
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 3.2e-16 89.0 130 40.8
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.2e-16 88.6 129 40.3
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 9.3e-16 87.4 100 44.0
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 9.3e-16 87.4 121 43.8
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.2e-15 87.0 140 37.1
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.2e-15 87.0 121 42.1
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.6e-15 86.7 125 40.8
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 2.1e-15 86.3 115 41.7
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.7e-15 85.9 101 45.5
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 3.5e-15 85.5 82 48.8
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 7.8e-15 84.3 133 35.3
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 1.0e-14 84.0 82 56.1
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.0e-14 84.0 118 42.4
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 1.0e-14 84.0 77 54.5
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 1.3e-14 83.6 139 36.0
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.7e-14 83.2 130 40.8
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.7e-14 83.2 140 37.1
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.3e-14 82.8 136 39.7
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 2.3e-14 82.8 88 53.4
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 2.3e-14 82.8 83 53.0
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 3.9e-14 82.0 86 40.7
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.1e-14 81.6 123 37.4
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.1e-14 81.6 123 37.4
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 5.1e-14 81.6 98 41.8
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 5.1e-14 81.6 89 42.7
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 6.6e-14 81.3 118 38.1
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 6.6e-14 81.3 124 37.9
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 8.7e-14 80.9 87 46.0
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 8.7e-14 80.9 93 43.0
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 8.7e-14 80.9 77 53.2
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.1e-13 80.5 131 35.1
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.1e-13 80.5 130 40.0
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 1.1e-13 80.5 119 44.5
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.1e-13 80.5 138 37.0
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.5e-13 80.1 136 38.2
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 1.9e-13 79.7 137 35.8
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 2.5e-13 79.3 123 36.6
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.5e-13 79.3 123 36.6
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 4.3e-13 78.6 123 35.8
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 4.3e-13 78.6 120 38.3
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 4.3e-13 78.6 141 34.8
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 4.3e-13 78.6 111 41.4
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 5.6e-13 78.2 145 41.4
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 5.6e-13 78.2 103 44.7
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 5.6e-13 78.2 101 41.6
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 7.3e-13 77.8 145 41.4
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 7.3e-13 77.8 130 38.5
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 7.3e-13 77.8 144 34.7
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 9.6e-13 77.4 141 40.4
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.3e-12 77.0 113 42.5
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 1.3e-12 77.0 98 40.8
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.3e-12 77.0 84 52.4
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.6e-12 76.6 66 51.5
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.6e-12 76.6 117 40.2
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.6e-12 76.6 117 40.2
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 1.6e-12 76.6 123 36.6
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 2.8e-12 75.9 105 41.0
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 2.8e-12 75.9 94 45.7
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 2.8e-12 75.9 134 34.3
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.8e-12 75.9 108 39.8
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 3.6e-12 75.5 134 36.6
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 3.6e-12 75.5 136 33.8
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 6.2e-12 74.7 65 53.8
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 6.2e-12 74.7 71 56.3
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 6.2e-12 74.7 111 36.9
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 8.1e-12 74.3 80 46.2
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 8.1e-12 74.3 80 46.2
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 8.1e-12 74.3 105 40.0
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 8.1e-12 74.3 104 40.4
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 8.1e-12 74.3 127 46.5
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.1e-11 73.9 63 52.4
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.1e-11 73.9 85 45.9
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 1.4e-11 73.6 88 39.8
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.4e-11 73.6 80 46.2
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.4e-11 73.6 80 46.2
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.4e-11 73.6 121 35.5
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.4e-11 73.6 80 45.0
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 1.8e-11 73.2 77 49.4
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.8e-11 73.2 103 43.7
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 2.4e-11 72.8 80 45.0
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 2.4e-11 72.8 80 45.0
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 3.1e-11 72.4 106 39.6
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 4.0e-11 72.0 95 44.2
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 4.0e-11 72.0 116 39.7
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 5.3e-11 71.6 74 50.0
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 5.3e-11 71.6 83 47.0
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 9.0e-11 70.9 73 52.1
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 9.0e-11 70.9 118 42.4
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 9.0e-11 70.9 111 42.3
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 9.0e-11 70.9 70 47.1
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 1.5e-10 70.1 68 50.0
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 2.0e-10 69.7 57 50.9
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 2.0e-10 69.7 57 50.9
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 2.0e-10 69.7 57 50.9
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 2.0e-10 69.7 99 45.5
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 2.0e-10 69.7 70 45.7
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 2.6e-10 69.3 107 40.2
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 3.4e-10 68.9 121 38.0
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 3.4e-10 68.9 93 39.8
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.4e-10 68.9 69 46.4
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 4.4e-10 68.6 74 45.9
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 5.8e-10 68.2 90 45.6
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 7.6e-10 67.8 85 47.1
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 1.3e-09 67.0 116 38.8
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 4.9e-09 65.1 120 37.5
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 6.4e-09 64.7 93 39.8
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 6.4e-09 64.7 103 37.9
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 6.4e-09 64.7 95 43.2
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 8.4e-09 64.3 47 66.0
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 8.4e-09 64.3 59 59.3
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.1e-08 63.9 121 38.0
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 1.1e-08 63.9 72 45.8
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.1e-08 63.9 44 63.6
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.9e-08 63.2 84 42.9
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 1.9e-08 63.2 81 46.9
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.4e-08 62.8 74 45.9
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 4.2e-08 62.0 87 44.8
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 4.2e-08 62.0 88 45.5
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 4.2e-08 62.0 46 54.3
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 4.2e-08 62.0 64 46.9
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 3.5e-07 58.9 84 41.7
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 6.0e-07 58.2 48 50.0
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.0e-06 57.4 63 47.6
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 6.6e-06 54.7 63 46.0


User provided reference genes

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