Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 4.8e-61 237.7 120 100.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 1.3e-45 186.4 101 93.1
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.3e-34 149.8 84 89.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.2e-32 143.3 77 93.5
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 4.7e-32 141.4 77 92.2
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.2e-22 110.2 79 67.1
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 3.3e-22 108.6 79 65.8
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.7e-21 106.3 98 59.2
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.7e-21 106.3 78 71.8
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.7e-21 106.3 98 60.2
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.2e-21 105.9 79 64.6
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.2e-21 105.9 107 49.5
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.8e-21 105.5 78 66.7
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.7e-21 105.1 98 58.2
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 6.3e-21 104.4 79 65.8
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.3e-21 104.4 79 63.3
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.3e-21 104.4 79 63.3
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.1e-20 103.6 79 63.3
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.1e-20 103.6 79 65.8
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.4e-20 103.2 80 66.2
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-20 102.8 79 62.0
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.4e-20 102.4 107 48.6
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 2.4e-20 102.4 79 64.6
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.1e-20 102.1 79 62.0
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 3.1e-20 102.1 79 62.0
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 3.1e-20 102.1 79 63.3
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 4.1e-20 101.7 79 62.0
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.1e-20 101.7 79 62.0
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 5.3e-20 101.3 78 64.1
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 5.3e-20 101.3 78 67.9
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 5.3e-20 101.3 78 64.1
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 7.0e-20 100.9 107 50.5
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 7.0e-20 100.9 78 60.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 9.1e-20 100.5 79 62.0
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 9.1e-20 100.5 110 50.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.2e-19 100.1 79 63.3
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.2e-19 100.1 79 63.3
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.2e-19 100.1 76 64.5
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.2e-19 100.1 107 46.7
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.2e-19 100.1 79 60.8
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.2e-19 100.1 99 54.5
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.2e-19 100.1 79 62.0
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.0e-19 99.4 78 62.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.0e-19 99.4 107 48.6
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.7e-19 99.0 79 59.5
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.7e-19 99.0 79 60.8
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.5e-19 98.6 79 63.3
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 3.5e-19 98.6 79 62.0
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 3.5e-19 98.6 79 59.5
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 3.5e-19 98.6 79 62.0
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 3.5e-19 98.6 77 62.3
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 3.5e-19 98.6 79 59.5
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 4.5e-19 98.2 79 62.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 5.9e-19 97.8 77 62.3
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.7e-19 97.4 79 62.0
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 7.7e-19 97.4 79 63.3
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 7.7e-19 97.4 79 63.3
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.0e-18 97.1 79 60.8
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.0e-18 97.1 79 60.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.0e-18 97.1 100 54.0
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-18 97.1 80 62.5
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-18 97.1 100 54.0
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.0e-18 97.1 80 62.5
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.0e-18 97.1 79 62.0
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.0e-18 97.1 99 54.5
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.3e-18 96.7 79 63.3
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.3e-18 96.7 79 60.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.7e-18 96.3 107 46.7
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.2e-18 95.9 80 61.2
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.2e-18 95.9 105 49.5
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 2.9e-18 95.5 78 61.5
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.9e-18 95.5 89 56.2
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.9e-18 95.5 79 57.0
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 3.8e-18 95.1 79 59.5
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.8e-18 95.1 78 61.5
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 3.8e-18 95.1 105 50.5
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 5.0e-18 94.7 79 59.5
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 5.0e-18 94.7 79 60.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 5.0e-18 94.7 79 62.0
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 5.0e-18 94.7 79 62.0
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 8.5e-18 94.0 79 55.7
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 8.5e-18 94.0 79 60.8
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.1e-17 93.6 98 50.0
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.1e-17 93.6 79 57.0
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.5e-17 93.2 100 52.0
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.5e-17 93.2 79 60.8
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.5e-17 93.2 79 60.8
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.5e-17 93.2 79 57.0
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.5e-17 93.2 79 57.0
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.9e-17 92.8 79 53.2
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.9e-17 92.8 79 53.2
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.9e-17 92.8 105 49.5
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 2.5e-17 92.4 79 58.2
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.5e-17 92.4 78 56.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 2.5e-17 92.4 77 59.7
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 3.2e-17 92.0 79 62.0
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 7.2e-17 90.9 106 49.1
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.2e-16 90.1 79 51.9
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.2e-16 90.1 79 57.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.2e-16 90.1 79 59.5
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.2e-16 90.1 105 46.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.7e-16 88.2 79 50.6
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 4.7e-16 88.2 77 55.8
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 6.1e-16 87.8 79 55.7
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 6.1e-16 87.8 79 55.7
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.8e-15 86.3 105 43.8
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 2.3e-15 85.9 79 53.2
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 5.2e-15 84.7 101 51.5
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.5e-14 83.2 77 50.6
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.6e-14 82.4 79 50.6
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.8e-13 79.0 97 46.4
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.1e-12 77.0 70 54.3
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 1.8e-12 76.3 97 45.4
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.8e-12 76.3 77 53.2
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.1e-12 75.1 77 49.4
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 7.0e-12 74.3 59 59.3
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.7e-10 69.7 147 32.0
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 3.8e-10 68.6 62 54.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 5.0e-10 68.2 61 54.1
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 6.6e-10 67.8 52 59.6
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.6e-08 63.2 58 55.2
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 6.1e-08 61.2 44 65.9
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.6e-06 55.8 62 48.4
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.6e-06 55.8 44 56.8
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.4e-06 55.5 52 57.7
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 3.4e-06 55.5 65 41.5
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 4.4e-06 55.1 82 41.5
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 7.5e-06 54.3 88 42.0


User provided reference genes

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