Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 6.0e-103 377.5 186 100.0
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 5.5e-80 301.2 186 80.6
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 4.6e-63 245.0 158 79.1
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.3e-62 242.7 158 78.5
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 2.2e-57 226.1 160 71.9
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 2.9e-57 225.7 160 71.9
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 8.2e-44 181.0 158 57.0
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.1e-43 180.6 158 57.0
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.7e-39 166.0 159 54.1
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.6e-37 159.5 159 53.5
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.3e-37 159.1 164 52.4
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 7.5e-37 157.9 169 50.9
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 8.3e-36 154.5 162 52.5
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 1.8e-35 153.3 159 50.9
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.2e-34 150.6 160 52.5
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.2e-34 150.6 160 49.4
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.6e-34 150.2 159 50.3
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 3.5e-34 149.1 162 51.9
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 3.5e-34 149.1 171 46.8
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 7.7e-34 147.9 158 49.4
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 7.7e-34 147.9 159 49.7
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.0e-33 147.5 159 50.3
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.0e-33 147.5 162 51.2
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.0e-33 147.5 159 49.7
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 1.3e-33 147.1 160 48.1
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.3e-33 147.1 159 48.4
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.7e-33 146.7 159 50.9
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.9e-33 146.0 159 47.2
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 5.0e-33 145.2 159 47.8
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 6.5e-33 144.8 162 46.9
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 8.5e-33 144.4 162 51.2
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.1e-32 144.1 159 47.2
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.5e-32 143.7 158 51.3
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 1.9e-32 143.3 159 47.8
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 3.2e-32 142.5 158 48.1
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 5.5e-32 141.7 160 50.0
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 9.4e-32 141.0 158 47.5
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 9.4e-32 141.0 158 47.5
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.2e-31 140.6 169 47.3
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.2e-31 140.6 162 50.0
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.6e-31 140.2 159 50.3
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 2.7e-31 139.4 157 47.8
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 3.6e-31 139.0 154 46.8
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.1e-31 138.3 159 48.4
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 6.1e-31 138.3 158 46.8
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 6.1e-31 138.3 158 46.8
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 8.0e-31 137.9 158 47.5
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.0e-30 137.5 159 46.5
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.0e-30 137.5 159 47.8
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.0e-30 137.5 159 47.8
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.4e-30 137.1 159 46.5
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.8e-30 136.7 160 46.2
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.8e-30 136.7 159 48.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.3e-30 136.3 159 45.9
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 2.3e-30 136.3 169 46.7
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.3e-30 136.3 169 46.7
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 3.0e-30 136.0 162 46.3
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 4.0e-30 135.6 159 45.3
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 4.0e-30 135.6 159 45.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 4.0e-30 135.6 160 45.6
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 5.2e-30 135.2 158 46.2
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 5.2e-30 135.2 160 46.2
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 8.8e-30 134.4 159 45.9
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 8.8e-30 134.4 160 45.6
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.5e-29 133.7 159 45.9
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.5e-29 133.7 159 47.8
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.5e-29 133.7 155 46.5
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.5e-29 133.7 159 46.5
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.0e-29 133.3 159 44.0
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 2.6e-29 132.9 144 50.0
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 2.6e-29 132.9 159 44.7
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.6e-29 132.9 159 45.3
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 2.6e-29 132.9 161 46.6
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 3.4e-29 132.5 158 46.8
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 5.7e-29 131.7 159 44.7
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 9.8e-29 131.0 158 45.6
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.3e-28 130.6 160 46.9
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.7e-28 130.2 161 44.1
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.7e-28 130.2 161 45.3
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 2.2e-28 129.8 159 44.0
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 2.2e-28 129.8 155 46.5
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 2.2e-28 129.8 161 43.5
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.2e-28 129.8 161 44.7
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 3.7e-28 129.0 159 45.3
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 3.7e-28 129.0 158 45.6
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 3.7e-28 129.0 159 42.1
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 4.8e-28 128.6 158 46.8
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 6.3e-28 128.3 181 44.8
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 6.3e-28 128.3 160 46.2
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.8e-27 126.7 160 46.2
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 2.4e-27 126.3 159 44.7
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.1e-27 125.6 158 43.0
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.1e-27 125.6 158 43.7
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 7.0e-27 124.8 159 42.1
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 7.0e-27 124.8 159 44.7
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 9.1e-27 124.4 158 45.6
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 9.1e-27 124.4 174 45.4
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.6e-26 123.6 158 43.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 1.6e-26 123.6 160 44.4
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.7e-26 122.9 160 43.1
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 2.7e-26 122.9 165 46.7
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.5e-26 122.1 158 42.4
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 5.9e-26 121.7 164 48.2
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.3e-25 120.6 159 40.9
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 1.3e-25 120.6 161 42.2
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 1.7e-25 120.2 162 41.4
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 1.7e-25 120.2 162 44.4
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.3e-25 119.8 158 43.0
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.8e-25 119.0 151 42.4
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.3e-24 115.9 119 52.9
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.2e-23 114.0 163 41.7
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 2.8e-23 112.8 137 46.7
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 6.8e-22 108.2 161 40.4
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 6.8e-22 108.2 156 41.7
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.3e-20 104.0 160 40.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.7e-20 103.6 157 39.5
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.7e-20 102.4 159 41.5
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 3.7e-20 102.4 103 53.4
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 4.9e-20 102.1 108 50.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 4.9e-20 102.1 160 41.2
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 6.3e-20 101.7 162 39.5
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 6.3e-20 101.7 160 40.6
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 6.3e-20 101.7 117 45.3
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 8.3e-20 101.3 160 39.4
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-19 100.9 160 40.0
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-19 100.5 159 40.9
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.4e-19 100.5 159 40.9
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 2.4e-19 99.8 159 41.5
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 3.1e-19 99.4 155 41.3
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 4.1e-19 99.0 105 48.6
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.2e-18 97.4 170 36.5
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.0e-18 96.7 108 51.9
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 2.7e-18 96.3 160 38.8
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 5.6e-16 88.6 165 35.2
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 2.8e-15 86.3 161 33.5
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.2e-13 80.9 159 34.0
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 3.7e-12 75.9 80 48.8
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 4.9e-12 75.5 60 63.3
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-11 74.3 80 47.5
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.1e-11 74.3 80 47.5
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.2e-10 70.9 101 39.6
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.6e-10 70.5 52 65.4
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 6.0e-10 68.6 71 50.7
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 3.9e-09 65.9 159 34.0
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 6.6e-09 65.1 151 32.5
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 4.3e-08 62.4 56 53.6
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 7.3e-08 61.6 157 28.7
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.2e-07 60.8 50 56.0


User provided reference genes

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