Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 0.0e+00 1989.2 1044 100.0
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 0.0e+00 1624.8 1033 84.5
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 3.6e-144 516.9 1053 38.7
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 3.7e-125 453.8 1081 35.0
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 1.3e-122 445.3 1092 34.2
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.6e-115 421.8 1100 33.5
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 1.3e-114 418.7 1110 33.4
PSO731G0067 Papaver somniferum HOM05D006788 ORTHO05D008265 9.4e-113 412.5 266 83.5
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 8.3e-101 372.9 1103 31.1
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 1.1e-100 372.5 1104 32.0
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 2.1e-96 358.2 1091 32.3
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.4e-95 355.5 1138 33.3
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 5.2e-95 353.6 1107 30.4
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 3.4e-94 350.9 1105 30.7
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 2.2e-93 348.2 1073 31.4
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.8e-92 345.1 1113 30.4
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.4e-92 344.7 1112 32.5
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 4.1e-92 344.0 1100 31.2
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.7e-90 338.6 1048 32.1
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.0e-90 337.8 1101 31.8
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.0e-90 337.0 1106 29.6
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 6.6e-90 336.7 1111 29.4
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.1e-89 335.9 1110 29.5
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.3e-89 334.3 1105 29.5
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.4e-87 328.9 1113 31.2
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 4.0e-87 327.4 1113 31.5
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 5.2e-87 327.0 1119 29.0
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 6.8e-87 326.6 1103 28.7
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 8.9e-87 326.2 1132 30.0
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.6e-86 324.7 1067 31.3
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 2.6e-86 324.7 1112 29.3
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 3.4e-86 324.3 1104 29.6
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 5.8e-86 323.6 1096 29.2
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 3.0e-82 311.2 1078 29.8
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 8.6e-82 309.7 1031 30.5
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 8.6e-82 309.7 1111 31.1
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 8.6e-82 309.7 1106 29.5
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 4.7e-80 303.9 1093 28.9
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 3.1e-79 301.2 1084 30.0
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 5.8e-78 297.0 1093 29.5
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 5.8e-78 297.0 1122 28.2
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 7.5e-78 296.6 1106 28.2
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 8.3e-77 293.1 1058 30.4
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 6.6e-74 283.5 1087 28.3
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 2.5e-73 281.6 1132 28.4
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 3.3e-73 281.2 1086 27.7
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 2.1e-72 278.5 1075 28.9
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 1.4e-71 275.8 1045 28.8
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.6e-70 271.6 892 32.2
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 3.2e-68 264.6 1082 29.0
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 3.2e-68 264.6 1134 28.6
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 3.2e-68 264.6 1142 28.1
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 2.1e-67 261.9 1099 27.9
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 4.6e-67 260.8 1063 29.0
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 2.3e-66 258.5 1055 28.7
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 3.0e-66 258.1 1069 28.4
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 4.3e-65 254.2 940 31.3
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 5.6e-65 253.8 1070 28.5
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 9.6e-65 253.1 1094 28.4
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.1e-64 251.9 1084 28.8
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.1e-63 249.6 1076 28.3
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 2.2e-61 241.9 1061 28.1
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.4e-60 239.2 1078 27.4
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 2.4e-60 238.4 1072 27.0
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 9.3e-60 236.5 1113 27.2
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 3.5e-59 234.6 1099 26.7
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 6.0e-59 233.8 1059 28.0
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 3.0e-58 231.5 1058 27.2
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 5.1e-58 230.7 1077 27.3
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 4.8e-56 224.2 1092 26.4
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.2e-54 219.5 1075 25.8
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 4.9e-53 214.2 1078 26.3
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 6.4e-53 213.8 1084 25.6
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 8.4e-53 213.4 1241 26.0
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 3.3e-49 201.4 1041 25.7
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 3.3e-49 201.4 924 25.9
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 4.3e-49 201.1 1061 27.1
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 9.6e-49 199.9 1051 25.0
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.1e-48 198.7 986 26.8
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 6.2e-48 197.2 1063 26.6
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 4.0e-47 194.5 475 37.5
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 2.0e-46 192.2 1044 25.7
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 1.3e-45 189.5 1040 24.5
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 1.7e-45 189.1 1033 25.5
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 2.9e-45 188.3 820 28.0
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 3.8e-45 188.0 1042 25.5
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 4.9e-45 187.6 1037 25.7
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 8.4e-45 186.8 1033 25.4
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 8.4e-45 186.8 1046 26.8
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 1.9e-44 185.7 1037 25.1
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 2.4e-44 185.3 1037 25.5
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.1e-43 182.2 455 33.8
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 1.1e-41 176.4 1047 25.0
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.5e-41 176.0 1050 26.1
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 9.6e-41 173.3 1058 26.1
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.3e-40 172.9 1041 24.3
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 7.6e-38 163.7 1055 26.2
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 1.4e-36 159.5 1017 24.7
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 2.5e-36 158.7 1060 24.1
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 3.2e-36 158.3 847 29.0
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 2.5e-33 148.7 216 38.9
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 5.7e-33 147.5 1045 23.3
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 7.2e-28 130.6 206 36.9
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.1e-25 123.2 859 25.5
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 9.7e-25 120.2 167 38.3
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 4.8e-24 117.9 340 29.7
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 5.3e-23 114.4 930 24.6
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 4.7e-19 101.3 178 36.0
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 1.0e-18 100.1 123 40.7
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 2.3e-18 99.0 1083 23.3
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 6.7e-18 97.4 416 30.5
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.1e-17 96.7 355 25.4
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 1.5e-17 96.3 1070 22.1
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 5.7e-17 94.4 937 22.4
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 5.0e-13 81.3 191 30.4
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 1.6e-11 76.3 881 23.3
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 3.6e-11 75.1 917 22.0
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 3.6e-11 75.1 959 22.5
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.4e-10 73.2 875 22.5
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.3e-10 72.4 276 25.7
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 3.9e-10 71.6 889 23.7
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 5.2e-10 71.2 170 28.8
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 6.7e-10 70.9 901 22.8
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 1.5e-09 69.7 255 29.0
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.7e-08 66.2 167 31.7
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 2.2e-08 65.9 534 25.5
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 4.8e-08 64.7 899 22.6
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 8.2e-08 63.9 168 28.0
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 8.2e-08 63.9 917 22.4
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.8e-07 62.8 912 22.8
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.4e-07 62.4 192 29.2
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 4.1e-07 61.6 362 24.0
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 5.3e-07 61.2 903 23.5
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 5.3e-07 61.2 261 29.1
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 7.0e-07 60.8 208 30.8
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 9.1e-07 60.5 168 27.4
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.6e-06 59.7 173 29.5
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.6e-06 59.7 119 35.3
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.6e-06 58.9 118 33.1
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 4.5e-06 58.2 225 29.8
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 4.5e-06 58.2 883 22.1
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 4.5e-06 58.2 931 21.3
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 4.5e-06 58.2 988 21.5
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 7.7e-06 57.4 965 21.5


User provided reference genes

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