Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G7677 Papaver somniferum HOM05D004089 ORTHO05D004687 1.5e-66 256.1 135 100.0
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 2.6e-63 245.4 135 94.8
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 2.7e-36 155.6 137 63.5
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 4.7e-33 144.8 135 60.0
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 5.2e-32 141.4 135 61.5
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 5.8e-31 137.9 135 57.8
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 7.6e-31 137.5 135 57.8
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 6.4e-30 134.4 137 58.4
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 3.2e-29 132.1 130 57.7
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 1.0e-27 127.1 121 56.2
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 1.0e-27 127.1 110 59.1
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 3.0e-27 125.6 137 55.5
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 5.1e-27 124.8 125 52.0
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 1.5e-26 123.2 134 51.5
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 2.5e-26 122.5 110 58.2
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 5.6e-26 121.3 135 53.3
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 5.6e-26 121.3 135 50.4
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 7.3e-26 120.9 133 48.1
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 4.8e-25 118.2 121 52.9
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 6.2e-25 117.9 137 50.4
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 1.4e-24 116.7 136 50.0
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 1.4e-24 116.7 132 50.8
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 1.8e-24 116.3 136 50.7
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 3.1e-24 115.5 132 47.7
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 3.1e-24 115.5 137 50.4
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 3.1e-24 115.5 99 60.6
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 4.0e-24 115.2 132 48.5
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 5.3e-24 114.8 138 49.3
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 6.9e-24 114.4 136 50.7
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 9.0e-24 114.0 125 51.2
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 9.0e-24 114.0 135 48.1
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 1.2e-23 113.6 139 49.6
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 1.5e-23 113.2 99 57.6
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 2.0e-23 112.8 117 51.3
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 2.0e-23 112.8 117 51.3
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 2.0e-23 112.8 129 50.4
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 2.6e-23 112.5 117 51.3
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 3.4e-23 112.1 110 50.9
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 4.5e-23 111.7 132 48.5
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 5.8e-23 111.3 110 50.0
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 5.8e-23 111.3 135 47.4
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 5.8e-23 111.3 123 48.8
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 5.8e-23 111.3 99 60.6
CDE04G1821 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 7.6e-23 110.9 122 49.2
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 7.6e-23 110.9 134 47.0
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 7.6e-23 110.9 128 50.8
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 9.9e-23 110.5 109 53.2
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 9.9e-23 110.5 96 61.5
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.3e-22 110.2 101 54.5
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 1.3e-22 110.2 126 52.4
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 1.3e-22 110.2 106 58.5
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 1.7e-22 109.8 128 49.2
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 1.7e-22 109.8 106 51.9
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 2.9e-22 109.0 121 50.4
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 4.9e-22 108.2 136 48.5
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 4.9e-22 108.2 110 51.8
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 6.4e-22 107.8 100 56.0
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 8.4e-22 107.5 123 43.9
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 1.4e-21 106.7 119 48.7
CDE07G1350 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 1.4e-21 106.7 132 43.2
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 1.4e-21 106.7 135 43.0
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 1.4e-21 106.7 128 47.7
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 1.4e-21 106.7 136 49.3
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 1.9e-21 106.3 128 48.4
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 1.9e-21 106.3 98 56.1
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 2.4e-21 105.9 135 42.2
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 2.4e-21 105.9 130 47.7
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 3.2e-21 105.5 128 48.4
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 3.2e-21 105.5 124 49.2
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 4.2e-21 105.1 135 41.5
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 4.2e-21 105.1 136 48.5
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 7.1e-21 104.4 122 49.2
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 7.1e-21 104.4 108 53.7
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 7.1e-21 104.4 101 54.5
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 7.1e-21 104.4 123 52.0
COL.COLO4_12233 Corchorus olitorius HOM05D004089 ORTHO05D004687 9.3e-21 104.0 100 57.0
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 9.3e-21 104.0 136 46.3
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 9.3e-21 104.0 125 49.6
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 9.3e-21 104.0 105 52.4
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 9.3e-21 104.0 120 49.2
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 1.2e-20 103.6 131 49.6
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 1.6e-20 103.2 133 47.4
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.1e-20 102.8 130 46.9
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 2.7e-20 102.4 101 52.5
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 2.7e-20 102.4 126 48.4
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 4.6e-20 101.7 92 62.0
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 4.6e-20 101.7 97 49.5
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 7.9e-20 100.9 123 43.9
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 7.9e-20 100.9 121 50.4
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 7.9e-20 100.9 99 53.5
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 7.9e-20 100.9 138 44.9
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 1.0e-19 100.5 137 43.1
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.0e-19 100.5 121 49.6
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 1.0e-19 100.5 136 46.3
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 1.3e-19 100.1 120 46.7
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.3e-19 100.1 110 50.9
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 1.3e-19 100.1 110 50.9
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 1.3e-19 100.1 99 55.6
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 1.8e-19 99.8 99 53.5
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 1.8e-19 99.8 134 45.5
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 3.0e-19 99.0 122 46.7
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 3.9e-19 98.6 122 47.5
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 3.9e-19 98.6 105 49.5
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 6.7e-19 97.8 122 44.3
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 6.7e-19 97.8 106 48.1
CSS0047924 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 8.7e-19 97.4 101 52.5
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 8.7e-19 97.4 121 49.6
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 1.9e-18 96.3 129 47.3
Atru.chr8.335 Acer truncatum HOM05D004089 ORTHO05D004687 2.5e-18 95.9 96 54.2
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 2.5e-18 95.9 104 48.1
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 2.5e-18 95.9 108 49.1
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 3.3e-18 95.5 131 45.8
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 3.3e-18 95.5 87 57.5
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 5.6e-18 94.7 119 45.4
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 5.6e-18 94.7 125 47.2
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 5.6e-18 94.7 119 46.2
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 7.4e-18 94.4 119 46.2
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 7.4e-18 94.4 96 53.1
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 1.3e-17 93.6 85 57.6
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 1.3e-17 93.6 121 45.5
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 1.6e-17 93.2 106 46.2
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 2.1e-17 92.8 119 45.4
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 2.1e-17 92.8 133 43.6
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 2.1e-17 92.8 133 36.8
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 2.8e-17 92.4 119 45.4
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 2.8e-17 92.4 119 44.5
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 2.8e-17 92.4 119 45.4
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 2.8e-17 92.4 98 50.0
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 2.8e-17 92.4 93 53.8
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 2.8e-17 92.4 82 57.3
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 4.8e-17 91.7 99 50.5
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 1.1e-16 90.5 106 50.9
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 1.4e-16 90.1 96 51.0
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 1.8e-16 89.7 121 38.8
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 1.8e-16 89.7 119 45.4
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 1.8e-16 89.7 96 51.0
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 1.8e-16 89.7 106 48.1
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 1.8e-16 89.7 113 46.9
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 2.4e-16 89.4 87 58.6
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 3.1e-16 89.0 106 49.1
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 3.1e-16 89.0 100 49.0
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 3.1e-16 89.0 110 45.5
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 4.0e-16 88.6 119 43.7
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 4.0e-16 88.6 100 50.0
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 5.3e-16 88.2 121 44.6
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 6.9e-16 87.8 106 46.2
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 9.0e-16 87.4 101 52.5
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 9.0e-16 87.4 101 51.5
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 1.2e-15 87.0 106 47.2
Rhsim10G0035500 Rhododendron simsii HOM05D004089 ORTHO05D004687 2.0e-15 86.3 118 41.5
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 2.6e-15 85.9 99 54.5
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 3.4e-15 85.5 134 41.8
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 4.5e-15 85.1 105 49.5
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 4.5e-15 85.1 105 47.6
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 2.9e-14 82.4 98 48.0
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 3.8e-14 82.0 98 46.9
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 4.9e-14 81.6 99 43.4
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 8.4e-14 80.9 127 39.4
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 1.1e-13 80.5 99 44.4
Os12g0577200 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 1.6e-12 76.6 105 42.9
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 4.6e-12 75.1 99 41.4
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 3.0e-11 72.4 53 67.9
Os12g0507400 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 3.0e-11 72.4 98 42.9
unitig_749.g14136 Utricularia gibba HOM05D004089 ORTHO05D004687 5.1e-11 71.6 101 38.6
unitig_749.g13440 Utricularia gibba HOM05D004089 ORTHO05D004687 6.7e-11 71.2 117 40.2
Potri.012G068000 Populus trichocarpa HOM05D004089 ORTHO05D004687 3.3e-10 68.9 54 66.7
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 3.3e-10 68.9 99 40.4
Gohir.A11G032333 Gossypium hirsutum HOM05D004089 ORTHO05D004687 4.8e-09 65.1 58 60.3
Eucgr.I02003 Eucalyptus grandis HOM05D004089 ORTHO05D004687 2.4e-08 62.8 112 38.4
Zm00001eb264770 Zea mays HOM05D004089 ORTHO05D004687 2.4e-08 62.8 99 41.4
SEGI_21937 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 4.5e-07 58.5 100 41.0
SGA_v2.0_scaffold25G10938 Striga asiatica HOM05D004089 ORTHO05D004687 5.8e-07 58.2 97 37.1
CiPaw.06G089100 Carya illinoinensis HOM05D003669 ORTHO05D005046 1.3e-06 57.0 110 30.9
Lalb_Chr09g0329151 Lupinus albus HOM05D003669 ORTHO05D005046 1.3e-06 57.0 111 33.3
TPR.G34083 Trifolium pratense HOM05D003669 ORTHO05D005046 2.2e-06 56.2 110 30.0
MELO3C012128.2 Cucumis melo HOM05D003669 ORTHO05D005046 2.9e-06 55.8 106 29.2
CsaV3_5G033070 Cucumis sativus L. HOM05D003669 ORTHO05D005046 6.5e-06 54.7 106 28.3
MBI04_g10457_MAGBIO Magnolia biondii HOM05D003669 ORTHO05D012266 6.5e-06 54.7 89 39.3
Medtr4g082350 Medicago truncatula HOM05D003669 ORTHO05D005046 6.5e-06 54.7 109 28.4
VMungo0251G2119 Vigna mungo HOM05D003669 ORTHO05D005046 6.5e-06 54.7 110 30.9
Psat7g135560 Pisum sativum HOM05D003669 ORTHO05D005046 8.4e-06 54.3 110 30.0


User provided reference genes

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