Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 5.7e-300 1033.5 525 100.0
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.1e-294 1015.0 525 98.1
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 4.2e-178 628.6 534 61.8
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.1e-157 559.3 533 56.5
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.5e-154 550.4 534 56.7
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 2.3e-152 543.1 514 56.4
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 2.2e-150 536.6 534 54.7
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 2.4e-141 506.5 526 52.3
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 8.6e-139 498.0 533 52.0
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.1e-138 497.7 553 50.6
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 6.4e-134 481.9 533 49.3
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 1.9e-133 480.3 530 50.9
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 2.4e-133 479.9 530 50.9
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 9.2e-133 478.0 567 48.1
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 2.0e-132 476.9 557 49.2
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 3.5e-132 476.1 533 49.2
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 3.0e-131 473.0 533 50.1
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.6e-129 467.2 513 50.3
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 2.1e-129 466.8 532 48.5
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.2e-129 465.3 533 50.5
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.1e-128 464.5 534 49.8
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.8e-128 463.8 533 50.1
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.3e-128 463.4 537 47.7
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.3e-128 463.4 548 48.2
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 4.0e-128 462.6 533 49.9
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 6.8e-128 461.8 532 49.1
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 7.5e-127 458.4 535 49.0
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 7.5e-127 458.4 530 47.7
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 3.7e-126 456.1 529 47.4
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 8.3e-126 454.9 537 49.9
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.4e-125 454.1 533 48.4
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 4.1e-125 452.6 534 46.6
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 9.2e-125 451.4 542 48.5
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 2.7e-124 449.9 533 48.2
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 3.0e-123 446.4 530 46.6
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 4.3e-122 442.6 530 48.1
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 5.6e-122 442.2 536 47.6
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 4.7e-121 439.1 534 48.9
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 3.4e-119 433.0 524 47.9
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 3.8e-118 429.5 531 48.2
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 6.4e-118 428.7 535 47.3
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.2e-116 424.5 525 47.0
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 3.5e-116 422.9 536 46.8
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 1.3e-115 421.0 508 47.6
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.1e-114 417.9 451 51.2
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 2.5e-114 416.8 539 46.4
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 2.5e-114 416.8 560 45.5
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 9.6e-114 414.8 528 45.3
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 1.4e-112 411.0 531 46.5
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 3.1e-112 409.8 540 45.7
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 1.5e-111 407.5 539 46.9
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 4.4e-111 406.0 541 46.0
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 9.9e-111 404.8 542 44.8
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 1.3e-110 404.4 520 45.4
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 1.3e-110 404.4 536 47.0
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.3e-110 404.4 551 43.6
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 2.9e-110 403.3 532 45.3
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.4e-109 400.2 550 44.5
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 3.2e-109 399.8 525 44.0
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 4.2e-109 399.4 507 45.8
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.3e-109 398.3 546 44.5
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.3e-109 398.3 546 44.3
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.3e-109 398.3 546 44.5
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.7e-108 396.7 560 43.8
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 3.5e-108 396.4 533 44.5
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 4.6e-108 396.0 533 43.7
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.0e-107 394.8 551 42.5
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 3.0e-107 393.3 531 41.1
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 5.1e-107 392.5 548 43.6
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.1e-106 391.3 535 43.4
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 3.3e-106 389.8 528 45.5
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 2.1e-105 387.1 536 44.4
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 4.8e-105 386.0 539 42.7
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.8e-104 384.0 533 43.0
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 5.3e-104 382.5 534 43.3
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 5.8e-103 379.0 543 42.4
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 1.3e-102 377.9 533 45.4
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 8.4e-102 375.2 534 42.5
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 4.2e-101 372.9 531 42.6
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 9.3e-101 371.7 606 39.4
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 9.3e-101 371.7 528 42.2
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 2.1e-100 370.5 534 43.3
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.0e-99 368.2 533 43.9
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.3e-99 367.9 532 41.7
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 3.0e-99 366.7 531 43.3
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 6.7e-99 365.5 531 42.4
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 4.3e-98 362.8 536 41.8
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.0e-95 354.0 532 41.2
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 6.4e-94 349.0 522 38.9
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.4e-93 347.8 548 42.2
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 5.5e-93 345.9 531 40.3
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 9.3e-93 345.1 531 40.7
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 6.0e-92 342.4 533 39.6
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.0e-91 341.7 531 40.5
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.0e-91 341.7 531 40.5
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 1.3e-91 341.3 531 40.5
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 2.3e-91 340.5 416 47.1
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 3.9e-91 339.7 386 50.0
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 8.7e-91 338.6 529 39.5
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 8.7e-91 338.6 436 46.1
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.6e-89 334.3 563 35.7
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 2.8e-89 333.6 386 49.5
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.1e-88 331.6 483 43.1
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.4e-88 331.3 523 39.2
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 5.3e-88 329.3 531 39.7
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 6.9e-88 328.9 681 35.5
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.5e-87 327.8 543 39.4
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 2.5e-85 320.5 562 36.5
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 4.2e-85 319.7 531 38.6
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.6e-84 317.8 531 38.6
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 6.0e-84 315.8 464 41.8
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 3.9e-83 313.2 576 37.7
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 2.2e-78 297.4 331 50.2
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 7.2e-77 292.4 535 37.6
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 7.2e-77 292.4 537 36.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.2e-76 291.6 564 35.1
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 8.7e-75 285.4 538 36.1
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 5.7e-74 282.7 336 50.6
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.5e-66 258.1 275 51.6
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 1.3e-65 255.0 392 41.1
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 7.2e-61 239.2 220 56.8
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 7.2e-61 239.2 433 33.9
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.7e-57 228.0 486 34.2
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 5.0e-54 216.5 269 48.0
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 9.4e-53 212.2 279 44.1
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 2.7e-52 210.7 446 32.1
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 8.0e-52 209.1 359 37.9
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.4e-48 197.6 253 43.9
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 7.7e-47 192.6 171 57.3
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 1.1e-40 172.2 301 38.9
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 5.0e-38 163.3 134 59.7
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 3.5e-31 140.6 328 35.1
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 4.7e-28 130.2 154 43.5
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.0e-27 129.0 154 44.2
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 8.9e-27 125.9 182 38.5
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 8.9e-27 125.9 160 44.4
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 5.7e-26 123.2 148 43.2
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 1.8e-24 118.2 254 35.0
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 4.1e-24 117.1 538 23.8
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 1.6e-23 115.2 136 43.4
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 2.3e-22 111.3 211 35.1
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 3.9e-22 110.5 658 23.3
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 9.5e-21 105.9 134 43.3
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 1.8e-19 101.7 188 31.4
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 1.2e-18 99.0 116 44.8
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.1e-12 78.2 218 28.4
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 2.3e-11 74.7 228 27.2
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 6.6e-06 56.6 96 33.3


User provided reference genes

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