Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 3.4e-36 154.5 77 100.0
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 3.4e-36 154.5 77 100.0
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.0e-28 128.6 74 83.8
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 3.4e-28 127.9 74 82.4
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 5.8e-28 127.1 74 83.8
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 7.6e-28 126.7 73 83.6
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.3e-27 125.9 74 79.7
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.3e-27 125.9 72 84.7
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.7e-27 125.6 74 82.4
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 2.2e-27 125.2 74 79.7
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.9e-27 124.8 74 79.7
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.9e-27 124.8 74 79.7
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.9e-27 124.8 73 79.5
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 3.8e-27 124.4 74 79.7
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.8e-27 124.4 74 79.7
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 3.8e-27 124.4 76 77.6
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 4.9e-27 124.0 74 78.4
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 4.9e-27 124.0 74 79.7
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 6.5e-27 123.6 74 81.1
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 6.5e-27 123.6 74 78.4
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 6.5e-27 123.6 74 79.7
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 8.4e-27 123.2 73 80.8
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 8.4e-27 123.2 74 77.0
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.1e-26 122.9 73 78.1
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.1e-26 122.9 74 78.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.4e-26 122.5 73 79.5
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.4e-26 122.5 74 78.4
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.4e-26 122.5 79 75.9
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.4e-26 122.5 74 78.4
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 71 78.9
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 74 78.4
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.9e-26 122.1 74 78.4
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 1.9e-26 122.1 74 78.4
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.9e-26 122.1 74 77.0
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.9e-26 122.1 74 77.0
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 1.9e-26 122.1 74 77.0
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.9e-26 122.1 74 78.4
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 2.5e-26 121.7 72 77.8
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 2.5e-26 121.7 71 80.3
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 3.2e-26 121.3 74 74.3
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 4.2e-26 120.9 74 77.0
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 4.2e-26 120.9 73 78.1
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 5.5e-26 120.6 74 75.7
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 5.5e-26 120.6 74 77.0
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 5.5e-26 120.6 74 77.0
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 7.1e-26 120.2 74 74.3
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 7.1e-26 120.2 74 77.0
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.6e-25 119.0 73 75.3
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.6e-25 119.0 73 75.3
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.6e-25 119.0 70 80.0
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.1e-25 118.6 74 74.3
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.7e-25 118.2 62 91.9
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.7e-25 118.2 72 80.6
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.7e-25 118.2 74 75.7
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 3.5e-25 117.9 70 78.6
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.5e-25 117.9 75 70.7
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 4.6e-25 117.5 74 77.0
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 4.6e-25 117.5 71 77.5
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 4.6e-25 117.5 66 84.8
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.0e-25 117.1 73 74.0
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 7.9e-25 116.7 62 90.3
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 7.9e-25 116.7 74 74.3
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 7.9e-25 116.7 74 74.3
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.0e-24 116.3 72 79.2
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 1.0e-24 116.3 74 73.0
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.0e-24 116.3 73 75.3
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.3e-24 115.9 70 77.1
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 1.8e-24 115.5 70 74.3
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.3e-24 115.2 74 71.6
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 2.3e-24 115.2 77 70.1
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 2.3e-24 115.2 73 74.0
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 3.0e-24 114.8 77 68.8
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 3.0e-24 114.8 77 70.1
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 3.0e-24 114.8 74 71.6
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.9e-24 114.4 68 77.9
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 3.9e-24 114.4 74 71.6
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 5.1e-24 114.0 74 71.6
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.1e-24 114.0 74 70.3
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 5.1e-24 114.0 77 68.8
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 5.1e-24 114.0 64 84.4
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 6.7e-24 113.6 73 72.6
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 6.7e-24 113.6 72 73.6
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 6.7e-24 113.6 64 84.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 1.1e-23 112.8 77 67.5
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.5e-23 112.5 70 71.4
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 4.3e-23 110.9 65 81.5
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 4.3e-23 110.9 74 68.9
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.7e-23 110.5 74 67.6
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 7.4e-23 110.2 74 68.9
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 9.6e-23 109.8 69 72.5
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 9.6e-23 109.8 69 71.0
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.3e-22 109.4 77 64.9
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.3e-22 109.4 77 63.6
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.3e-22 109.4 73 69.9
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 2.8e-22 108.2 70 72.9
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.7e-22 107.8 69 72.5
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 3.7e-22 107.8 70 65.7
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 4.8e-22 107.5 70 71.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 8.2e-22 106.7 69 71.0
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.1e-21 106.3 69 68.1
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.4e-21 105.9 69 72.5
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.4e-21 105.9 69 72.5
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.4e-21 105.9 69 72.5
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.4e-21 105.9 69 72.5
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 1.8e-21 105.5 60 81.7
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.8e-21 105.5 74 63.5
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.1e-21 104.4 63 77.8
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 5.3e-21 104.0 60 81.7
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 9.0e-21 103.2 67 68.7
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 9.0e-21 103.2 72 65.3
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 9.0e-21 103.2 72 65.3
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.2e-20 102.8 74 62.2
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.5e-20 102.4 74 62.2
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 3.4e-20 101.3 57 84.2
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 3.4e-20 101.3 73 65.8
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 5.9e-20 100.5 74 60.8
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.7e-19 99.0 54 83.3
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.8e-19 97.8 66 65.2
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 5.0e-19 97.4 69 60.9
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 6.5e-19 97.1 69 63.8
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 6.5e-19 97.1 70 61.4
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 6.5e-19 97.1 57 77.2
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 8.5e-19 96.7 71 59.2
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.1e-18 96.3 70 60.0
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 1.4e-18 95.9 70 60.0
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 1.4e-18 95.9 70 60.0
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 1.4e-18 95.9 70 60.0
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.4e-18 95.9 70 60.0
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.5e-18 95.1 74 58.1
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 3.2e-18 94.7 66 60.6
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 5.5e-18 94.0 62 69.4
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.6e-17 92.4 71 56.3
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.1e-17 92.0 71 56.3
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 4.6e-17 90.9 62 66.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 6.1e-17 90.5 53 73.6
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 7.9e-17 90.1 55 74.5
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.3e-16 89.4 59 62.7
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.1e-15 86.3 59 64.4
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.5e-15 85.1 69 53.6
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 1.1e-13 79.7 59 61.0
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 5.9e-12 73.9 46 71.7
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 7.7e-12 73.6 73 52.1
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 3.2e-10 68.2 59 55.9
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.8e-08 62.4 59 50.8
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 3.3e-07 58.2 80 33.8
FAN18G4143 Fragaria x ananassa HOM05D005222 ORTHO05D006230 8.2e-06 53.5 72 41.7


User provided reference genes

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