Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2097.0 1116 100.0
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1998.0 1116 95.8
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 1239.6 1136 62.7
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1142.5 1130 59.0
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1138.3 1137 58.4
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 1129.4 1129 58.8
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 1106.7 1132 58.3
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1103.2 1131 56.6
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1101.7 1133 57.6
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 1101.7 1133 57.5
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 1093.6 1137 56.1
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 1083.2 1122 57.1
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1077.4 1133 56.6
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 5.8e-310 1067.8 1124 56.9
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 3.7e-309 1065.1 1130 56.4
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 1.1e-305 1053.5 1119 56.7
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.3e-305 1052.0 1131 55.1
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 1.8e-303 1046.2 1147 54.5
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 6.8e-303 1044.3 1125 55.7
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 8.9e-303 1043.9 1040 59.6
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 8.9e-303 1043.9 1131 55.6
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 1.5e-302 1043.1 1125 55.2
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 7.1e-300 1034.2 1159 55.0
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 1.2e-299 1033.5 1125 55.5
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 7.8e-299 1030.8 1125 55.3
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 6.2e-296 1021.1 1123 55.7
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 1.8e-295 1019.6 1126 55.7
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 6.0e-291 1004.6 1133 54.3
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 3.0e-290 1002.3 1130 53.3
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 4.3e-289 998.4 1138 53.1
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 1.3e-288 996.9 1126 53.3
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 6.2e-288 994.6 1120 54.8
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 1.1e-287 993.8 1127 53.6
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 2.4e-287 992.6 1123 52.2
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 5.4e-284 981.5 1122 52.2
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 8.1e-280 967.6 1124 51.7
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 4.0e-279 965.3 1124 52.6
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 6.9e-279 964.5 1126 52.2
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 1.2e-278 963.8 1119 52.5
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 9.3e-276 954.1 1126 50.5
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 6.0e-275 951.4 1144 51.3
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 3.1e-271 939.1 1122 51.2
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 3.2e-268 929.1 1129 50.8
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 1.0e-266 924.1 1125 50.1
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 1.3e-266 923.7 1119 50.5
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 8.7e-266 921.0 1099 52.0
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 1.1e-265 920.6 1129 51.0
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 2.5e-265 919.5 1127 50.7
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 1.1e-263 914.1 1137 48.2
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 1.2e-262 910.6 1123 50.3
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 1.2e-262 910.6 1117 50.9
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 1.5e-262 910.2 1126 50.6
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 2.0e-262 909.8 1121 50.6
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 7.6e-262 907.9 1135 49.0
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 1.7e-261 906.7 957 54.1
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 2.9e-261 906.0 1132 50.4
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 5.0e-261 905.2 1113 50.3
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.2e-259 900.6 959 52.5
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 2.1e-259 899.8 1129 48.7
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 6.3e-256 888.3 1115 50.9
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 6.9e-255 884.8 1123 48.2
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 9.1e-255 884.4 1159 48.7
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 9.1e-255 884.4 1117 50.0
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 1.5e-254 883.6 1126 48.7
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 2.0e-254 883.2 1127 49.3
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 1.7e-253 880.2 1046 51.1
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 1.7e-253 880.2 1114 48.3
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 1.2e-246 857.4 1135 49.7
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 3.4e-246 855.9 1130 49.2
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 5.9e-246 855.1 1118 49.1
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 3.0e-234 816.2 1168 44.9
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 3.0e-234 816.2 1123 46.9
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 3.0e-234 816.2 870 51.6
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 1.2e-233 814.3 1129 46.8
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 2.6e-233 813.1 1115 46.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 9.1e-231 804.7 1116 48.9
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 2.9e-229 799.7 1119 44.9
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 1.1e-228 797.7 1134 47.0
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 1.1e-191 674.9 915 44.2
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 9.3e-167 592.0 734 44.1
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.9e-160 570.5 825 40.2
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 1.0e-136 492.3 784 39.5
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 9.4e-135 485.7 1206 34.6
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 7.7e-113 412.9 462 48.1
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 2.9e-112 411.0 580 51.0
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 1.9e-111 408.3 1194 32.2
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 4.7e-110 403.7 478 47.3
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 4.0e-101 374.0 855 31.6
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.8e-94 351.3 343 59.2
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 7.0e-90 336.7 727 31.8
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 4.3e-87 327.4 493 40.6
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 4.9e-75 287.3 388 60.1
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 7.8e-65 253.4 359 57.4
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 7.8e-57 226.9 316 59.8
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 2.3e-56 225.3 1265 24.4
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 1.1e-37 163.3 187 58.8
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 3.1e-37 161.8 191 56.5
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 3.1e-37 161.8 175 61.1
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 5.3e-37 161.0 346 47.4
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 2.5e-34 152.1 149 64.4
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.9e-26 125.9 389 42.9
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.6e-25 122.9 183 50.8
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 5.1e-24 117.9 140 49.3
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 2.0e-12 79.3 81 79.0
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 5.5e-10 71.2 66 56.1
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 2.2e-06 59.3 61 54.1


User provided reference genes

Program Settings