Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 2.5e-167 592.0 296 100.0
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 6.0e-89 331.6 320 56.9
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.5e-87 326.2 322 57.5
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.6e-86 323.6 280 59.6
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.0e-80 304.3 305 57.0
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 8.7e-80 301.2 295 58.0
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 1.1e-79 300.8 302 55.0
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 4.3e-79 298.9 216 68.5
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.8e-78 295.4 287 56.8
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 6.2e-78 295.0 224 67.4
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 6.2e-78 295.0 191 75.9
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 6.2e-78 295.0 191 75.9
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 3.1e-77 292.7 232 63.8
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 4.0e-77 292.4 219 68.9
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.2e-76 290.8 216 68.1
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.2e-76 290.8 230 64.8
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.2e-76 290.8 219 68.9
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.0e-76 290.0 318 51.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 2.6e-76 289.7 221 66.5
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 3.4e-76 289.3 206 71.4
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 9.9e-76 287.7 220 64.5
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.3e-75 287.3 284 56.0
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.2e-75 286.6 222 64.9
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 2.9e-75 286.2 236 63.6
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 2.9e-75 286.2 213 68.5
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.8e-75 285.8 219 67.6
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 8.4e-75 284.6 221 65.6
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.4e-74 283.9 269 56.9
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.9e-74 283.5 216 68.1
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.9e-74 283.5 292 54.5
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.4e-74 283.1 219 65.8
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 9.3e-74 281.2 202 68.3
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.2e-73 280.8 265 57.7
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.1e-73 280.0 192 70.3
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 2.7e-73 279.6 244 61.5
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.0e-72 277.7 215 66.0
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.0e-72 277.7 215 66.0
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.3e-72 277.3 211 65.9
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.3e-72 277.3 213 65.7
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 2.3e-72 276.6 283 53.0
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 3.0e-72 276.2 190 70.0
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 3.0e-72 276.2 232 60.3
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 3.9e-72 275.8 256 55.5
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 6.7e-72 275.0 220 63.6
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 6.7e-72 275.0 299 55.2
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 6.7e-72 275.0 195 69.7
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 8.7e-72 274.6 220 63.6
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 8.7e-72 274.6 220 63.6
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 8.7e-72 274.6 213 63.8
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 1.1e-71 274.2 251 57.4
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.1e-71 274.2 189 71.4
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.1e-71 274.2 214 62.1
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.5e-71 273.9 214 62.1
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 2.5e-71 273.1 210 67.6
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.3e-70 270.8 193 69.4
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 2.1e-70 270.0 187 70.6
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 2.1e-70 270.0 190 68.9
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 4.8e-70 268.9 220 62.3
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 4.8e-70 268.9 296 50.7
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 6.2e-70 268.5 193 68.9
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 6.2e-70 268.5 188 70.7
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 8.1e-70 268.1 205 67.3
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 8.1e-70 268.1 195 69.2
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 8.1e-70 268.1 188 69.1
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.4e-69 267.3 201 63.2
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 2.4e-69 266.5 190 70.0
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 4.0e-69 265.8 208 66.8
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 5.3e-69 265.4 221 62.9
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 5.3e-69 265.4 217 66.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 6.9e-69 265.0 192 67.7
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 6.9e-69 265.0 219 61.2
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 9.0e-69 264.6 189 67.7
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.6e-68 263.1 283 53.4
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 3.4e-68 262.7 194 68.6
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 7.6e-68 261.5 187 70.6
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 7.6e-68 261.5 189 68.3
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 7.6e-68 261.5 189 68.3
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 7.6e-68 261.5 189 68.3
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.0e-67 261.2 204 64.2
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 1.3e-67 260.8 239 57.7
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 1.7e-67 260.4 221 58.8
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.7e-67 260.4 185 68.6
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.2e-67 260.0 205 63.4
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.9e-67 259.6 189 69.8
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.9e-67 259.6 277 51.3
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 3.8e-67 259.2 187 69.0
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 8.4e-67 258.1 190 68.9
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 8.4e-67 258.1 264 54.9
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.1e-66 257.7 195 68.7
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.4e-66 257.3 185 68.1
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 3.2e-66 256.1 185 68.1
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 9.3e-66 254.6 199 65.3
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 9.3e-66 254.6 215 60.9
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 9.3e-66 254.6 199 67.8
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.5e-65 252.7 187 67.4
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 3.5e-65 252.7 213 57.3
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.0e-64 251.1 197 65.5
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.3e-64 250.8 203 64.5
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.8e-64 250.4 276 54.0
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 2.3e-64 250.0 186 67.7
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 6.7e-64 248.4 186 67.7
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.5e-63 246.5 214 60.7
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.3e-63 246.1 214 58.9
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.3e-63 246.1 214 58.9
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 7.4e-63 245.0 285 50.2
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 7.4e-63 245.0 192 65.1
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 9.6e-63 244.6 185 70.3
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 6.3e-62 241.9 191 62.8
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 8.2e-62 241.5 274 54.0
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 3.1e-61 239.6 166 71.1
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.9e-59 233.0 238 54.6
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 3.8e-59 232.6 170 65.3
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.8e-59 232.6 227 55.5
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.1e-58 231.1 160 66.2
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.4e-53 214.2 136 75.0
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.2e-52 211.1 162 61.7
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 3.8e-51 206.1 158 67.7
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.1e-50 204.5 161 66.5
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.9e-50 203.8 171 62.0
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.5e-47 194.1 201 53.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 4.4e-47 192.6 158 65.2
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.7e-46 189.5 109 79.8
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 7.7e-44 181.8 170 55.3
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 6.5e-43 178.7 118 72.0
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 9.7e-39 164.9 93 81.7
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.7e-33 146.0 209 43.5
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 7.5e-31 138.7 92 69.6
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.1e-29 132.9 208 44.7
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.7e-28 130.2 140 45.0
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 1.5e-26 124.4 160 40.6
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 2.1e-25 120.6 133 43.6
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 8.8e-24 115.2 129 48.8
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.5e-23 112.1 111 53.2
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.5e-23 112.1 111 53.2
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 9.8e-23 111.7 132 50.0
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 2.8e-17 93.6 86 62.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 5.2e-16 89.4 82 59.8
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 6.3e-14 82.4 84 54.8
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.2e-12 78.2 155 41.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 4.5e-12 76.3 41 82.9
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 7.3e-10 68.9 55 60.0
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.4e-08 64.7 56 66.1


User provided reference genes

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