Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 9.5e-108 393.7 218 100.0
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.8e-106 389.4 218 98.2
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 3.6e-75 285.4 219 65.8
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 9.9e-73 277.3 191 70.7
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.2e-72 276.2 191 70.7
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 3.8e-72 275.4 189 70.4
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 4.2e-71 271.9 188 69.1
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 5.4e-71 271.6 189 70.9
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 7.1e-71 271.2 188 68.6
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 2.1e-70 269.6 189 68.8
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 4.6e-70 268.5 190 68.4
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 2.3e-69 266.2 189 67.7
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 2.3e-69 266.2 187 67.9
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 8.7e-69 264.2 192 68.2
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 1.5e-68 263.5 187 66.8
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 4.3e-68 261.9 188 69.1
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 5.6e-68 261.5 189 66.1
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 9.6e-68 260.8 189 66.1
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.3e-67 260.4 190 66.8
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 2.1e-67 259.6 188 66.5
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 2.1e-67 259.6 219 59.8
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 2.1e-67 259.6 193 65.3
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 2.8e-67 259.2 188 68.1
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 3.6e-67 258.8 218 59.2
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 4.8e-67 258.5 191 64.4
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.8e-67 258.5 189 65.1
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 6.2e-67 258.1 189 66.1
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 8.1e-67 257.7 219 59.4
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.8e-66 256.5 190 66.8
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.4e-66 256.1 189 65.1
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 2.4e-66 256.1 188 66.0
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 6.9e-66 254.6 188 64.4
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.5e-65 253.4 188 67.6
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 2.6e-65 252.7 189 65.1
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 3.4e-65 252.3 219 61.2
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.4e-65 252.3 234 56.4
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 4.5e-65 251.9 188 62.2
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 4.5e-65 251.9 189 63.5
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 7.6e-65 251.1 188 62.2
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 7.6e-65 251.1 189 64.0
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 9.9e-65 250.8 188 64.9
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.3e-64 250.4 187 65.8
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.2e-64 249.6 188 66.0
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 2.9e-64 249.2 188 63.8
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 4.9e-64 248.4 185 63.2
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 4.9e-64 248.4 187 65.2
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.1e-63 247.3 186 62.9
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.1e-63 247.3 242 54.1
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 2.4e-63 246.1 189 63.5
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 3.2e-63 245.7 189 63.5
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 7.1e-63 244.6 188 64.9
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 1.2e-62 243.8 188 62.2
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 2.1e-62 243.0 210 57.6
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 2.7e-62 242.7 188 63.8
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 6.0e-62 241.5 188 62.8
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 6.0e-62 241.5 188 65.4
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 2.3e-61 239.6 189 61.9
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 3.9e-61 238.8 189 61.4
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 6.7e-61 238.0 188 62.8
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 8.7e-61 237.7 187 62.6
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.9e-60 236.5 190 61.1
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 4.3e-60 235.3 187 62.0
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 4.3e-60 235.3 187 62.0
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 4.3e-60 235.3 188 61.7
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 4.3e-60 235.3 188 62.8
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 7.4e-60 234.6 187 62.6
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 9.6e-60 234.2 187 61.5
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.3e-59 233.8 191 62.8
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 2.1e-59 233.0 200 58.5
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 3.6e-59 232.3 189 59.8
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 4.8e-59 231.9 188 59.6
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 4.8e-59 231.9 187 61.5
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 4.8e-59 231.9 187 61.5
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 4.8e-59 231.9 187 61.5
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 4.8e-59 231.9 188 59.6
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 4.8e-59 231.9 188 61.2
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 6.2e-59 231.5 187 61.0
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.1e-58 230.7 187 58.8
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 4.0e-58 228.8 187 59.9
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 5.3e-58 228.4 188 59.0
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 5.3e-58 228.4 188 60.6
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 5.3e-58 228.4 188 59.0
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 1.5e-57 226.9 187 59.4
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 2.6e-57 226.1 302 44.0
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 2.2e-56 223.0 190 57.9
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 4.9e-56 221.9 292 44.9
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 5.5e-55 218.4 218 51.8
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 6.0e-54 214.9 146 69.9
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.8e-53 213.4 176 61.9
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 3.9e-53 212.2 192 56.2
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 6.7e-53 211.5 142 66.9
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 8.7e-53 211.1 190 56.8
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 3.3e-52 209.1 333 40.2
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.8e-51 205.3 145 66.9
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 1.1e-50 204.1 189 56.6
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.4e-50 203.8 188 56.4
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 6.9e-50 201.4 219 50.7
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 2.6e-49 199.5 175 55.4
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 5.8e-49 198.4 188 52.1
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 4.3e-44 182.2 154 60.4
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 7.4e-44 181.4 143 62.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 6.3e-43 178.3 148 61.5
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.1e-42 177.6 114 75.4
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 9.0e-42 174.5 123 66.7
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.5e-39 166.4 191 46.6
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 1.2e-38 164.1 190 47.4
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.7e-38 162.9 146 55.5
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.6e-38 162.5 189 46.0
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 1.0e-37 161.0 191 45.5
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 2.8e-35 152.9 106 72.6
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 1.1e-34 151.0 101 76.2
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 2.3e-29 133.3 189 41.8
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 5.1e-29 132.1 188 41.5
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 6.7e-29 131.7 268 36.2
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.2e-27 126.7 122 54.9
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.1e-26 124.4 91 68.1
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 5.3e-26 122.1 90 67.8
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.2e-24 116.7 136 50.0
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.1e-18 97.8 75 58.7
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.5e-15 87.4 77 59.7
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 2.5e-15 86.7 90 46.7
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 2.5e-15 86.7 157 36.9
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.5e-15 85.5 89 47.2
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 7.2e-15 85.1 70 58.6
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.1e-14 83.6 89 43.8
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 2.7e-14 83.2 190 32.6
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.0e-13 81.3 89 43.8
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.3e-13 80.1 183 27.9
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 4.4e-12 75.9 54 68.5
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 9.7e-12 74.7 106 37.7
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 2.2e-11 73.6 57 63.2
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 2.8e-11 73.2 82 50.0
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.1e-10 69.3 86 45.3
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-09 67.8 52 59.6
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.5e-07 60.8 49 59.2
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 5.5e-07 58.9 49 63.3
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 5.5e-07 58.9 49 63.3
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 5.5e-07 58.9 49 63.3


User provided reference genes

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