Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 0.0e+00 1259.2 681 100.0
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 0.0e+00 1224.2 670 99.1
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.6e-310 1068.9 666 86.8
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 6.2e-307 1057.0 671 84.9
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 9.3e-303 1043.1 664 84.3
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 7.9e-302 1040.0 664 84.2
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.4e-298 1029.2 670 82.5
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.9e-295 1018.8 666 82.3
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 7.1e-295 1016.9 663 81.7
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 3.5e-294 1014.6 634 85.6
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 7.9e-294 1013.4 663 81.9
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.1e-292 1009.6 671 81.2
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.1e-292 1009.6 669 81.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.5e-292 1008.4 663 81.9
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.3e-292 1008.1 663 80.8
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 4.3e-292 1007.7 664 81.6
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 5.7e-292 1007.3 673 80.4
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 9.6e-292 1006.5 665 81.5
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.0e-288 996.5 663 81.3
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.3e-288 996.1 666 80.8
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.3e-288 996.1 665 80.8
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.7e-288 995.7 663 80.4
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.2e-288 995.3 663 80.4
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.9e-288 995.0 665 80.5
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.8e-288 994.6 649 82.9
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.3e-287 989.9 663 80.1
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 3.5e-286 988.0 667 80.8
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 6.1e-286 987.3 663 81.1
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.3e-285 986.1 664 79.7
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.8e-285 985.7 664 81.2
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 3.9e-285 984.6 675 78.7
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 3.9e-285 984.6 663 80.4
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.9e-285 984.6 727 74.8
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.9e-285 984.6 727 74.8
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 4.3e-284 981.1 661 80.8
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.3e-283 979.5 665 79.5
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 1.3e-283 979.5 666 79.9
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.3e-283 979.5 661 79.3
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.6e-283 979.2 670 79.1
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.6e-283 979.2 665 79.5
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.2e-283 978.8 647 80.2
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 2.8e-283 978.4 676 78.3
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 2.8e-283 978.4 665 79.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.8e-283 977.6 665 79.8
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 6.3e-283 977.2 674 78.2
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.4e-282 976.1 665 79.4
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 3.1e-282 974.9 665 79.5
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 9.0e-282 973.4 664 79.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.2e-281 973.0 665 77.9
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 2.6e-281 971.8 634 81.9
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.3e-280 969.5 663 78.7
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.7e-280 969.1 667 79.2
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 6.5e-280 967.2 677 77.5
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 6.5e-280 967.2 670 77.8
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 4.6e-278 961.1 676 77.1
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 1.0e-277 959.9 665 79.2
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 7.4e-276 953.7 677 78.1
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.8e-275 951.8 660 77.7
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 3.1e-274 948.3 676 76.5
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 3.1e-274 948.3 678 76.1
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 5.3e-274 947.6 714 73.2
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 5.3e-274 947.6 667 77.7
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.9e-274 947.2 665 77.6
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.0e-273 945.7 669 76.7
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.0e-273 945.7 714 73.9
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.0e-273 945.7 667 77.8
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 2.0e-273 945.7 639 80.6
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.0e-272 943.3 708 73.0
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.9e-271 939.1 684 74.9
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.5e-271 938.7 664 77.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 7.2e-271 937.2 676 75.6
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.2e-270 936.4 660 77.4
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 2.1e-270 935.6 676 75.4
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 5.1e-269 931.0 669 75.6
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 6.7e-269 930.6 658 78.1
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 4.1e-266 921.4 675 74.8
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 1.2e-265 919.8 677 74.4
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 1.5e-265 919.5 684 73.8
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 7.7e-265 917.1 673 74.4
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.8e-264 914.8 673 75.0
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 6.5e-264 914.1 659 74.2
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.5e-263 912.9 674 74.5
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 7.2e-263 910.6 673 76.2
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.2e-262 909.8 691 72.8
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 2.1e-262 909.1 573 85.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.0e-261 906.7 665 74.6
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 4.4e-260 901.4 634 77.1
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 9.7e-260 900.2 663 75.0
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.3e-259 899.8 637 77.7
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 4.8e-259 897.9 651 76.0
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 8.2e-259 897.1 665 74.1
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-258 896.7 712 71.1
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.2e-257 893.3 675 73.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.2e-257 893.3 714 70.0
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.2e-257 893.3 675 73.0
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.2e-254 883.2 664 73.6
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 2.7e-254 882.1 1013 54.3
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 6.1e-254 880.9 608 78.8
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.3e-253 879.0 664 73.5
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.7e-251 872.8 664 73.6
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.6e-249 866.3 649 73.2
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 1.0e-248 863.6 622 76.8
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.2e-247 858.6 698 69.6
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 4.2e-247 858.2 664 72.3
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 6.1e-246 854.4 669 70.7
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 8.0e-246 854.0 670 71.3
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.4e-245 853.2 670 71.2
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 9.8e-244 847.0 666 71.2
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.8e-244 847.0 690 69.7
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.4e-242 843.2 653 71.7
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.7e-240 836.3 649 70.6
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.2e-238 830.1 698 67.5
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.3e-221 772.7 665 65.4
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 3.5e-217 758.8 672 63.5
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.0e-216 757.3 713 63.0
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 5.6e-215 751.5 551 76.8
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 2.6e-212 742.7 671 62.3
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 4.3e-207 725.3 652 62.9
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 3.0e-168 596.3 424 78.8
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.2e-161 574.3 401 79.8
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 2.7e-161 573.2 678 50.1
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.5e-143 514.2 347 76.9
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 6.1e-137 492.3 343 74.1
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 2.4e-133 480.3 583 50.6
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 9.8e-111 405.2 417 60.4
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.1e-93 348.6 501 48.1
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 2.5e-90 337.4 507 47.7
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.6e-82 309.7 273 67.0
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 3.8e-78 297.0 710 32.4
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 6.7e-51 206.5 774 30.4
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.7e-49 200.7 185 61.6
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.4e-48 198.7 152 70.4
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.4e-48 198.7 560 31.2
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 3.4e-47 194.1 125 78.4
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.4e-45 188.7 151 67.5
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.5e-39 168.7 94 89.4
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.2e-28 132.5 605 26.6
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.2e-26 125.9 91 78.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.0e-26 125.2 711 22.5
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 1.3e-17 95.9 686 23.6
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 6.3e-17 93.6 71 67.6
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.6e-15 89.0 109 56.0
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.7e-15 88.2 82 67.1
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 6.1e-12 77.0 199 37.7
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.4e-11 75.9 82 62.2
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 1.2e-07 62.8 56 66.1
Nn3g17783 Nelumbo nucifera HOM05D004837 ORTHO05D005741 5.0e-06 57.4 61 57.4
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 6.6e-06 57.0 28 92.9


User provided reference genes

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