Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.5e-158 562.8 286 100.0
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 5.3e-151 537.7 287 96.9
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.1e-52 211.1 304 50.0
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.4e-50 204.1 230 59.6
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 9.0e-50 201.4 304 47.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.2e-49 201.1 306 47.4
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.0e-49 200.3 303 48.2
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 7.7e-49 198.4 308 47.1
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.7e-48 197.2 304 47.0
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.7e-48 197.2 304 47.0
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.7e-48 197.2 303 48.5
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 5.5e-47 192.2 305 46.2
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 5.5e-47 192.2 293 47.8
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 5.5e-47 192.2 291 47.1
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.6e-46 189.5 315 47.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 4.6e-46 189.1 303 46.9
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 2.3e-45 186.8 298 48.0
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 3.0e-45 186.4 303 47.9
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.0e-44 183.7 298 45.6
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.6e-44 183.3 215 53.5
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.3e-44 183.0 248 50.8
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.8e-43 179.9 291 45.4
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 6.3e-43 178.7 249 46.2
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 8.2e-43 178.3 307 45.9
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 3.1e-42 176.4 304 45.1
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.1e-42 176.0 292 44.5
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 5.3e-42 175.6 281 47.0
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 2.6e-41 173.3 260 48.1
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 5.9e-41 172.2 195 53.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 7.7e-41 171.8 246 47.2
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 7.7e-41 171.8 258 48.1
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.3e-40 171.0 308 43.5
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 1.7e-40 170.6 274 44.2
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 8.5e-40 168.3 255 46.7
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.9e-39 167.2 305 45.2
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.5e-39 166.8 254 47.2
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.2e-39 166.4 255 45.9
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.2e-39 166.4 225 50.2
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 4.2e-39 166.0 330 42.4
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 5.5e-39 165.6 300 44.7
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 7.2e-39 165.2 297 43.8
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 7.2e-39 165.2 307 41.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.2e-38 164.5 246 46.3
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.2e-38 164.5 300 42.7
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.6e-38 164.1 255 45.9
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.6e-38 164.1 295 42.0
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.7e-38 163.3 246 47.2
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 8.8e-37 158.3 300 40.3
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 3.3e-36 156.4 247 44.9
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 4.4e-36 156.0 244 43.9
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 5.7e-36 155.6 237 46.8
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.3e-35 154.5 301 40.9
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 3.7e-35 152.9 234 47.4
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.4e-34 151.0 204 48.0
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.8e-34 150.6 244 46.3
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.4e-34 150.2 237 46.0
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 3.1e-34 149.8 256 45.7
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 5.3e-34 149.1 253 43.9
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 2.6e-33 146.7 262 45.4
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.5e-33 146.4 265 42.6
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 3.5e-33 146.4 257 44.7
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 7.7e-33 145.2 260 42.3
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 7.7e-33 145.2 256 42.6
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.0e-32 144.8 268 40.3
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.2e-32 143.7 241 43.2
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 5.0e-32 142.5 259 43.6
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 8.5e-32 141.7 289 38.8
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 8.5e-32 141.7 289 38.8
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.1e-31 141.4 239 42.7
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.5e-31 141.0 297 39.1
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.9e-31 140.6 258 39.5
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.5e-31 140.2 241 42.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 3.2e-31 139.8 305 39.7
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 5.5e-31 139.0 265 39.6
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 5.5e-31 139.0 265 39.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 5.5e-31 139.0 265 39.6
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 7.2e-31 138.7 264 39.4
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 7.2e-31 138.7 263 38.8
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.2e-30 137.9 220 46.8
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.7e-30 136.7 253 41.5
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.7e-30 136.7 211 45.0
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 6.1e-30 135.6 328 36.3
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.0e-29 133.3 271 37.6
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 4.0e-29 132.9 247 40.5
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 4.0e-29 132.9 210 43.8
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.0e-28 130.6 167 49.7
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 4.4e-28 129.4 118 66.1
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 9.7e-28 128.3 221 43.4
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 9.7e-28 128.3 265 40.0
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.3e-27 127.9 252 37.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 4.8e-27 125.9 243 43.2
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 6.3e-27 125.6 240 39.2
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 8.2e-27 125.2 221 45.2
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 3.1e-26 123.2 245 38.0
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 5.3e-26 122.5 241 40.7
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 7.0e-26 122.1 259 37.5
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 9.1e-26 121.7 122 58.2
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 9.1e-26 121.7 221 40.7
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 2.0e-25 120.6 117 59.0
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.0e-25 120.6 247 39.3
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.7e-25 120.2 274 36.9
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.9e-25 119.0 254 38.6
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.3e-24 117.9 291 36.1
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.2e-24 117.1 203 42.9
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.9e-24 116.7 256 36.7
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 5.0e-24 115.9 252 39.7
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.5e-24 115.5 178 43.8
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.2e-23 113.2 142 52.8
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 5.5e-23 112.5 262 36.6
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 9.4e-23 111.7 136 52.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 8.0e-22 108.6 241 39.8
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 8.0e-22 108.6 201 44.8
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 6.8e-21 105.5 251 37.1
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.7e-20 102.4 232 36.2
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 9.8e-20 101.7 248 38.3
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.7e-19 99.8 235 35.7
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 6.3e-19 99.0 220 40.5
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 8.3e-19 98.6 87 69.0
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.1e-18 96.7 169 45.0
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 2.7e-17 93.6 46 93.5
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 3.5e-17 93.2 234 36.8
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 3.5e-17 93.2 234 36.8
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 3.5e-17 93.2 239 37.7
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.0e-16 91.7 241 36.9
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 2.2e-16 90.5 95 55.8
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.8e-16 89.7 243 34.6
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 3.8e-16 89.7 295 31.9
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 6.5e-16 89.0 244 36.5
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.1e-15 88.2 165 39.4
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.2e-14 84.7 304 31.2
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.6e-14 83.2 164 40.9
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 4.7e-14 82.8 108 52.8
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 6.1e-14 82.4 209 36.4
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 5.2e-13 79.3 316 30.7
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.2e-12 78.2 104 48.1
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 7.5e-12 75.5 214 32.7
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.7e-11 74.3 187 35.3
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.2e-11 73.9 71 54.9
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 2.8e-11 73.6 234 30.8
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 4.9e-11 72.8 60 60.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 4.9e-11 72.8 60 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.8e-10 70.9 106 42.5
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.8e-09 65.5 73 43.8
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.0e-08 65.1 176 39.8
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.3e-08 64.7 49 61.2
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 2.9e-08 63.5 152 33.6
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 3.8e-08 63.2 165 35.2
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.8e-08 63.2 146 28.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 6.6e-08 62.4 230 31.7
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.3e-07 60.1 256 28.5
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 3.3e-07 60.1 161 32.9
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 7.3e-07 58.9 55 50.9
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 2.1e-06 57.4 89 41.6
A07p12370 Brassica napus HOM05D000333 ORTHO05D000190 3.6e-06 56.6 107 35.5
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 6.1e-06 55.8 186 30.6
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 8.0e-06 55.5 65 41.5


User provided reference genes

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