Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 9.6e-80 300.4 192 100.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 1.3e-76 290.0 193 97.9
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 7.0e-38 161.4 193 47.7
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 1.6e-37 160.2 192 52.6
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.6e-37 160.2 193 48.7
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.6e-37 159.5 193 47.2
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 7.7e-37 157.9 195 47.7
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.0e-36 157.5 195 47.2
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.2e-36 156.4 192 53.6
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.9e-36 156.0 192 48.4
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 6.5e-36 154.8 193 46.6
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 1.1e-35 154.1 193 46.6
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.5e-35 153.7 192 46.9
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.5e-35 152.9 198 46.0
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 5.5e-35 151.8 193 58.5
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 9.4e-35 151.0 192 54.7
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.2e-34 150.6 192 45.3
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 6.1e-34 148.3 192 43.8
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.0e-33 146.0 192 44.3
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 5.2e-33 145.2 197 44.7
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 5.2e-33 145.2 197 44.7
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 5.2e-33 145.2 192 43.8
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.5e-32 143.7 192 43.8
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.0e-32 143.3 194 45.4
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 2.0e-32 143.3 195 44.6
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 2.6e-32 142.9 192 43.8
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 2.6e-32 142.9 196 44.4
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 4.4e-32 142.1 192 49.5
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 4.4e-32 142.1 192 43.8
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 7.5e-32 141.4 227 43.6
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.2e-31 139.8 193 43.0
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.2e-31 139.8 192 44.3
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 2.8e-31 139.4 192 43.2
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 4.8e-31 138.7 194 45.4
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 6.3e-31 138.3 193 41.5
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.1e-30 137.5 191 48.7
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.1e-30 137.5 195 40.0
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.1e-30 137.5 195 40.0
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.4e-30 136.3 192 41.7
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 3.1e-30 136.0 192 43.8
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 5.3e-30 135.2 193 47.7
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 7.0e-30 134.8 195 40.5
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 7.0e-30 134.8 194 41.8
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 1.2e-29 134.0 193 42.0
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 2.7e-29 132.9 192 40.1
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 3.5e-29 132.5 195 40.0
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.5e-29 132.1 196 40.3
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.5e-29 132.1 192 41.1
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 4.5e-29 132.1 192 42.7
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.9e-29 131.7 192 39.6
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 7.7e-29 131.3 195 39.5
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.0e-28 131.0 192 40.6
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.3e-28 130.6 188 38.8
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 1.3e-28 130.6 189 43.4
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.7e-28 130.2 192 41.1
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.7e-28 130.2 188 38.8
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.2e-28 129.8 186 43.0
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 2.2e-28 129.8 192 45.3
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.9e-28 129.4 192 54.2
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 3.8e-28 129.0 192 44.3
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 3.8e-28 129.0 195 41.0
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.8e-28 129.0 193 39.4
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 8.5e-28 127.9 194 40.2
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.1e-27 127.5 192 46.4
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.1e-27 127.5 192 46.4
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.1e-27 127.5 188 38.3
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.1e-27 127.5 192 40.1
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 1.1e-27 127.5 191 45.0
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.5e-27 126.3 192 45.8
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.2e-27 125.9 192 39.6
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 3.2e-27 125.9 188 37.8
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 7.2e-27 124.8 188 37.8
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 7.2e-27 124.8 192 38.5
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 7.2e-27 124.8 192 40.1
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 7.2e-27 124.8 192 38.0
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.2e-26 124.0 196 38.8
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.2e-26 124.0 193 40.4
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.1e-26 123.2 188 39.9
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.1e-26 123.2 188 38.3
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 3.6e-26 122.5 188 39.4
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 3.6e-26 122.5 194 51.5
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 3.6e-26 122.5 193 41.5
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 6.1e-26 121.7 193 41.5
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 6.1e-26 121.7 193 40.4
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.0e-25 120.9 192 41.1
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 1.0e-25 120.9 192 39.6
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.0e-25 120.9 192 39.1
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.4e-25 120.6 123 50.4
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.8e-25 120.2 192 38.5
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.8e-25 120.2 192 38.5
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 2.3e-25 119.8 193 37.3
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 5.2e-25 118.6 192 40.6
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 5.2e-25 118.6 190 37.4
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 8.8e-25 117.9 188 37.8
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 8.8e-25 117.9 188 38.3
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 8.8e-25 117.9 213 34.7
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 4.4e-24 115.5 193 36.8
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 5.7e-24 115.2 128 48.4
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 8.3e-23 111.3 184 38.0
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.1e-22 110.9 192 38.0
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.1e-22 110.9 192 38.5
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.1e-22 110.9 230 35.2
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.4e-22 110.5 192 37.5
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 5.4e-22 108.6 192 35.4
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 9.1e-22 107.8 178 47.8
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 9.1e-22 107.8 300 30.0
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.6e-21 107.1 189 38.6
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 1.6e-21 107.1 124 44.4
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 7.7e-21 104.8 190 36.3
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 7.7e-21 104.8 271 29.9
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.9e-20 102.8 188 34.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 2.9e-20 102.8 195 36.4
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.9e-20 102.8 122 48.4
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 3.8e-20 102.4 258 31.0
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 5.0e-20 102.1 198 33.3
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 6.6e-20 101.7 93 55.9
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 8.6e-20 101.3 190 35.8
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 1.9e-19 100.1 184 38.0
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 3.3e-19 99.4 180 37.2
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.2e-18 97.4 179 37.4
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.6e-18 97.1 182 36.8
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 4.7e-18 95.5 182 36.3
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 6.1e-18 95.1 126 42.9
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.3e-17 93.2 181 35.4
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 3.0e-17 92.8 181 35.9
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 3.0e-17 92.8 181 35.4
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.0e-17 92.4 180 35.0
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.0e-17 92.4 91 51.6
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 5.2e-17 92.0 185 35.1
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 6.8e-17 91.7 123 45.5
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 8.9e-17 91.3 92 50.0
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.2e-16 90.9 181 35.4
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.2e-16 90.9 181 35.4
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.2e-16 90.9 178 34.3
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 3.4e-16 89.4 181 34.3
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 4.4e-16 89.0 178 33.7
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 4.4e-16 89.0 178 33.7
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 7.5e-16 88.2 108 47.2
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 9.8e-16 87.8 120 45.0
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 9.8e-16 87.8 90 50.0
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-15 87.0 178 34.3
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 3.7e-15 85.9 91 53.8
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 8.3e-15 84.7 189 31.7
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.1e-14 84.3 121 41.3
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.4e-14 84.0 114 44.7
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.9e-12 76.3 87 44.8
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 3.8e-12 75.9 91 45.1
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 3.8e-12 75.9 93 41.9
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 8.0e-10 68.2 60 56.7
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.4e-09 67.4 117 35.9
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 4.4e-08 62.4 112 33.9
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.3e-07 60.8 38 73.7
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.3e-07 60.8 107 38.3
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.2e-06 56.2 106 34.9
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 9.2e-06 54.7 98 36.7


User provided reference genes

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