Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 3.4e-89 331.6 167 100.0
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 2.7e-86 322.0 167 97.0
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 3.0e-69 265.4 167 77.8
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 5.6e-68 261.2 167 76.6
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 2.4e-66 255.8 167 72.5
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 3.1e-66 255.4 166 76.5
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 6.9e-66 254.2 163 75.5
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-65 253.1 167 73.7
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-65 253.1 167 73.7
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-65 253.1 167 73.7
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 2.0e-65 252.7 167 73.7
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 4.5e-65 251.5 167 71.3
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 4.5e-65 251.5 168 73.2
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 1.7e-64 249.6 163 73.6
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 2.2e-64 249.2 167 70.7
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 2.9e-64 248.8 167 73.1
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 2.9e-64 248.8 167 73.1
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 2.9e-64 248.8 167 73.1
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 71.9
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.8e-64 248.4 163 74.2
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 3.8e-64 248.4 167 72.5
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 8.4e-64 247.3 166 72.9
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 8.4e-64 247.3 167 71.9
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 8.4e-64 247.3 167 72.5
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 8.4e-64 247.3 163 73.0
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.9e-63 246.1 163 73.0
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 1.9e-63 246.1 166 69.3
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 2.4e-63 245.7 166 71.7
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 2.4e-63 245.7 167 70.1
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 4.2e-63 245.0 167 71.3
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 5.4e-63 244.6 163 71.8
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 7.1e-63 244.2 163 71.8
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 9.3e-63 243.8 163 71.8
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 9.3e-63 243.8 163 74.2
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.2e-62 243.4 166 70.5
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.2e-62 243.4 163 71.8
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 70.5
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 1.6e-62 243.0 163 72.4
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.1e-62 242.7 154 76.0
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.5e-62 241.9 193 64.8
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 4.6e-62 241.5 166 71.1
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 4.6e-62 241.5 167 70.1
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 6.0e-62 241.1 167 70.1
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 6.0e-62 241.1 166 70.5
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 7.9e-62 240.7 167 70.1
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 7.9e-62 240.7 153 75.8
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.0e-61 240.4 166 72.3
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.3e-61 240.0 166 69.9
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 1.8e-61 239.6 167 69.5
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.8e-61 239.6 167 69.5
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.8e-61 239.6 167 69.5
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 1.8e-61 239.6 167 69.5
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 2.3e-61 239.2 163 70.6
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 2.3e-61 239.2 166 70.5
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 2.3e-61 239.2 169 68.6
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 2.3e-61 239.2 166 71.1
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 3.0e-61 238.8 167 69.5
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 3.9e-61 238.4 170 69.4
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 6.7e-61 237.7 159 73.6
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 6.7e-61 237.7 165 70.3
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 6.7e-61 237.7 166 69.3
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 8.7e-61 237.3 167 68.3
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 71.1
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 69.3
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.5e-60 236.5 169 68.6
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.9e-60 236.1 169 68.6
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 7.4e-60 234.2 167 68.3
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 9.6e-60 233.8 166 68.7
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.8e-59 232.3 166 66.9
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 3.7e-59 231.9 167 67.7
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 3.7e-59 231.9 167 70.1
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 4.8e-59 231.5 166 62.0
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 3.4e-57 225.3 185 61.6
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 7.6e-57 224.2 167 65.9
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 7.6e-57 224.2 168 66.1
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 1.7e-56 223.0 204 57.8
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 2.2e-56 222.6 149 71.8
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 8.4e-56 220.7 163 66.3
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.9e-55 219.5 191 58.6
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.4e-55 219.2 167 61.7
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 2.1e-54 216.1 138 74.6
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 3.9e-53 211.8 165 63.0
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 8.7e-53 210.7 165 62.4
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 1.9e-52 209.5 136 72.8
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.5e-52 209.1 191 58.1
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 9.6e-52 207.2 163 62.0
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 1.8e-50 203.0 140 68.6
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 3.1e-50 202.2 163 60.1
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 4.0e-50 201.8 165 60.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 6.9e-50 201.1 157 61.1
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 1.3e-48 196.8 161 60.2
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.7e-48 196.4 137 65.0
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 2.2e-48 196.1 139 69.1
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.8e-48 195.3 134 70.1
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 6.5e-48 194.5 118 78.8
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 6.5e-48 194.5 174 59.8
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.1e-47 193.7 116 80.2
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.4e-47 193.4 135 67.4
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 2.5e-47 192.6 163 55.2
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 3.2e-47 192.2 163 55.2
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 4.2e-47 191.8 163 54.6
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 4.2e-47 191.8 163 54.6
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 1.2e-46 190.3 163 57.1
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 1.6e-46 189.9 124 72.6
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 2.1e-46 189.5 127 66.9
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 3.5e-46 188.7 163 54.6
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.9e-46 187.6 167 54.5
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.0e-45 187.2 167 53.9
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.0e-45 187.2 167 53.3
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 1.8e-45 186.4 127 69.3
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 2.3e-45 186.0 116 75.0
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 8.7e-45 184.1 148 56.1
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 1.1e-44 183.7 116 75.9
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.3e-44 182.2 167 53.3
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 1.4e-42 176.8 163 50.9
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 3.1e-42 175.6 135 57.8
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 1.7e-40 169.9 116 69.0
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 8.5e-40 167.5 121 67.8
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 4.2e-39 165.2 140 60.7
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.2e-33 147.1 118 60.2
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.2e-33 147.1 167 48.5
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 4.5e-33 145.2 118 58.5
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 5.9e-33 144.8 162 46.3
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.0e-32 144.1 111 65.8
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 1.3e-32 143.7 163 47.2
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.7e-32 143.3 154 50.0
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 4.7e-30 135.2 134 57.5
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.8e-29 133.3 147 49.7
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.0e-29 132.5 118 53.4
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 5.7e-28 128.3 124 56.5
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 2.8e-27 125.9 92 63.0
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 3.1e-26 122.5 84 72.6
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 4.1e-26 122.1 145 42.8
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 2.2e-24 116.3 76 71.1
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.7e-22 109.4 103 51.5
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 3.0e-21 105.9 71 67.6
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 8.8e-21 104.4 145 41.4
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 5.7e-20 101.7 99 52.5
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 7.4e-20 101.3 69 66.7
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 2.4e-18 96.3 167 38.3
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 5.3e-18 95.1 73 58.9
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 5.3e-18 95.1 73 58.9
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 5.3e-18 95.1 73 58.9
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 3.5e-17 92.4 57 66.7
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 3.8e-16 89.0 59 67.8
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 4.2e-15 85.5 81 58.0
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 8.8e-13 77.8 57 59.6
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 1.3e-11 73.9 54 72.2
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 1.7e-11 73.6 75 56.0
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 2.4e-10 69.7 54 61.1
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 5.3e-10 68.6 167 32.3
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 1.2e-09 67.4 50 66.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.6e-09 67.0 49 65.3
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.9e-08 62.8 48 64.6
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 3.2e-07 59.3 43 74.4


User provided reference genes

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