Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5603 Papaver somniferum HOM05D005503 ORTHO05D008949 1.2e-59 233.0 121 100.0
TPR.G7098 Trifolium pratense HOM05D005503 ORTHO05D008949 5.0e-18 94.7 86 60.5
arahy.Tifrunner.gnm1.ann1.Z9GIA8 Arachis hypogaea HOM05D005503 ORTHO05D008949 8.6e-18 94.0 86 60.5
arahy.Tifrunner.gnm1.ann1.BJA8E7 Arachis hypogaea HOM05D005503 ORTHO05D008949 2.5e-17 92.4 117 52.1
Phvul.001G128900 Phaseolus vulgaris HOM05D005503 ORTHO05D008949 4.3e-17 91.7 88 58.0
Aqoxy2G00233 Aquilegia oxysepala HOM05D005503 ORTHO05D008949 5.6e-17 91.3 111 49.5
Glyma.03G133400 Glycine max HOM05D005503 ORTHO05D008949 7.3e-17 90.9 86 59.3
Glyma.19G135200 Glycine max HOM05D005503 ORTHO05D008949 7.3e-17 90.9 86 59.3
Prupe.7G052400 Prunus persica HOM05D005503 ORTHO05D008949 9.5e-17 90.5 91 57.1
Rhsim03G0032200 Rhododendron simsii HOM05D005503 ORTHO05D008949 1.2e-16 90.1 94 55.3
VMungo1383G2568 Vigna mungo HOM05D005503 ORTHO05D008949 1.2e-16 90.1 84 59.5
ATR0721G098 Amborella trichopoda HOM05D005503 ORTHO05D008949 1.6e-16 89.7 93 51.6
Medtr7g090930 Medicago truncatula HOM05D005503 ORTHO05D008949 2.1e-16 89.4 86 58.1
TAR636G0173 Trochodendron aralioides HOM05D005503 ORTHO05D008949 2.1e-16 89.4 87 57.5
GSVIVG01005042001 Vitis vinifera HOM05D005503 ORTHO05D008949 2.1e-16 89.4 92 55.4
CiPaw.10G036000 Carya illinoinensis HOM05D005503 ORTHO05D008949 2.8e-16 89.0 82 59.8
Gohir.A09G120500 Gossypium hirsutum HOM05D005503 ORTHO05D008949 2.8e-16 89.0 120 45.8
Gohir.D09G116600 Gossypium hirsutum HOM05D005503 ORTHO05D008949 2.8e-16 89.0 120 45.8
Gorai.006G134900 Gossypium raimondii HOM05D005503 ORTHO05D008949 2.8e-16 89.0 120 45.8
MD12G1083400 Malus domestica HOM05D005503 ORTHO05D008949 2.8e-16 89.0 91 54.9
Psat3g074800 Pisum sativum HOM05D005503 ORTHO05D008949 2.8e-16 89.0 95 55.8
Cpa.g.sc1079.1 Carica papaya HOM05D005503 ORTHO05D008949 3.6e-16 88.6 80 60.0
Lj1g0008024 Lotus japonicus HOM05D005503 ORTHO05D008949 3.6e-16 88.6 84 58.3
Atru.chr1.1203 Acer truncatum HOM05D005503 ORTHO05D008949 4.7e-16 88.2 86 58.1
COL.COLO4_36524 Corchorus olitorius HOM05D005503 ORTHO05D008949 4.7e-16 88.2 115 45.2
Duzib093G0766 Durio zibethinus HOM05D005503 ORTHO05D008949 4.7e-16 88.2 115 47.8
Lalb_Chr20g0115621 Lupinus albus HOM05D005503 ORTHO05D008949 6.2e-16 87.8 84 58.3
PGR004G2205 Punica granatum HOM05D005503 ORTHO05D008949 6.2e-16 87.8 120 44.2
FAN02G3508 Fragaria x ananassa HOM05D005503 ORTHO05D008949 8.1e-16 87.4 86 57.0
Potri.006G047800 Populus trichocarpa HOM05D005503 ORTHO05D008949 8.1e-16 87.4 116 45.7
Ah.13g077080 Amaranthus hybridus HOM05D005503 ORTHO05D008949 1.1e-15 87.0 93 51.6
RcHm_v2.0_Chr3g0483941 Rosa chinensis HOM05D005503 ORTHO05D008949 1.4e-15 86.7 86 57.0
Ciclev10006881m.g Citrus clementina HOM05D005503 ORTHO05D008949 1.8e-15 86.3 99 53.5
Haze_19781 Corylus avellana HOM05D005503 ORTHO05D008949 1.8e-15 86.3 88 56.8
Dinv39668 Davidia involucrata HOM05D005503 ORTHO05D008949 1.8e-15 86.3 85 56.5
FAN05G5816 Fragaria x ananassa HOM05D005503 ORTHO05D008949 1.8e-15 86.3 86 57.0
Lalb_Chr20g0110371 Lupinus albus HOM05D005503 ORTHO05D008949 1.8e-15 86.3 84 57.1
Manes.09G011000 Manihot esculenta HOM05D005503 ORTHO05D008949 1.8e-15 86.3 84 58.3
Nn2g15105 Nelumbo nucifera HOM05D005503 ORTHO05D008949 2.3e-15 85.9 119 48.7
CSS0039750 Camellia sinensis var. sinensis HOM05D005503 ORTHO05D008949 3.1e-15 85.5 86 57.0
Ca_22958_v3 Cicer arietinum L. HOM05D005503 ORTHO05D008949 3.1e-15 85.5 119 48.7
FvH4_6g24610 Fragaria vesca HOM05D005503 ORTHO05D008949 3.1e-15 85.5 108 50.0
FAN14G5504 Fragaria x ananassa HOM05D005503 ORTHO05D008949 3.1e-15 85.5 108 50.0
Sabra06G0033300 Salix brachista HOM05D005503 ORTHO05D008949 4.0e-15 85.1 116 45.7
Carub.0006s0293 Capsella rubella HOM05D005503 ORTHO05D008949 5.2e-15 84.7 86 54.7
Migut.J01714 Erythranthe guttata HOM05D005503 ORTHO05D008949 5.2e-15 84.7 126 43.7
EL10Ac3g07150 Beta vulgaris HOM05D005503 ORTHO05D008949 6.8e-15 84.3 84 52.4
Thecc.05G146600 Theobroma cacao HOM05D005503 ORTHO05D008949 8.9e-15 84.0 115 44.3
TWI77G0247 Tripterygium wilfordii HOM05D005503 ORTHO05D008949 8.9e-15 84.0 92 52.2
vmacro21945 Vaccinium macrocarpon HOM05D005503 ORTHO05D008949 8.9e-15 84.0 92 52.2
ClCG10G015610 Citrullus lanatus HOM05D005503 ORTHO05D008949 2.0e-14 82.8 89 51.7
QL07p004035 Quercus lobata HOM05D005503 ORTHO05D008949 2.0e-14 82.8 84 56.0
THA.LOC104816402 Tarenaya hassleriana HOM05D005503 ORTHO05D008949 2.0e-14 82.8 83 56.6
Actinidia39197 Actinidia chinensis HOM05D005503 ORTHO05D008949 2.6e-14 82.4 84 56.0
Aa31LG1G21320 Aethionema arabicum HOM05D005503 ORTHO05D008949 2.6e-14 82.4 93 50.5
Potri.016G044001 Populus trichocarpa HOM05D005503 ORTHO05D008949 3.4e-14 82.0 84 54.8
FAN09G2222 Fragaria x ananassa HOM05D005503 ORTHO05D008949 4.4e-14 81.6 86 54.7
Duzib128G0213 Durio zibethinus HOM05D005503 ORTHO05D008949 5.8e-14 81.3 115 43.5
MBI13_g26145_MAGBIO Magnolia biondii HOM05D005503 ORTHO05D008949 5.8e-14 81.3 87 50.6
Hund24647 Selenicereus undatus HOM05D005503 ORTHO05D008949 7.5e-14 80.9 94 48.9
Zm00001eb291660 Zea mays HOM05D005503 ORTHO05D008949 7.5e-14 80.9 77 55.8
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 9.8e-14 80.5 81 54.3
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 9.8e-14 80.5 81 54.3
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 9.8e-14 80.5 81 54.3
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 9.8e-14 80.5 81 54.3
ECA247G0412 Erigeron canadensis HOM05D005503 ORTHO05D008949 9.8e-14 80.5 132 39.4
Thhalv10016002m.g Eutrema salsugineum HOM05D005503 ORTHO05D008949 9.8e-14 80.5 96 50.0
Hma1.2p1_0110F.1_g052960 Hydrangea macrophylla HOM05D005503 ORTHO05D008949 9.8e-14 80.5 84 53.6
Oeu033023.1 Olea europaea HOM05D005503 ORTHO05D008949 9.8e-14 80.5 81 55.6
CANSAT80G2315 Cannabis sativa HOM05D005503 ORTHO05D008949 1.3e-13 80.1 82 53.7
Sc13g0001540 Simmondsia chinensis HOM05D005503 ORTHO05D008949 1.3e-13 80.1 96 51.0
Sp6g38760 Schrenkiella parvula HOM05D005503 ORTHO05D008949 1.7e-13 79.7 81 53.1
DCAR_020514 Daucus carota HOM05D005503 ORTHO05D008949 2.2e-13 79.3 85 52.9
HPP92_027974 Vanilla planifolia HOM05D005503 ORTHO05D008949 2.2e-13 79.3 77 53.2
CARHR209280 Cardamine hirsuta HOM05D005503 ORTHO05D008949 2.9e-13 79.0 87 51.7
AL6G13590 Arabidopsis lyrata HOM05D005503 ORTHO05D008949 3.7e-13 78.6 88 51.1
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 3.7e-13 78.6 81 53.1
AT5G04000 Arabidopsis thaliana HOM05D005503 ORTHO05D008949 4.9e-13 78.2 86 52.3
AUR62024521 Chenopodium quinoa HOM05D005503 ORTHO05D008949 8.3e-13 77.4 104 45.2
Eucgr.A02305 Eucalyptus grandis HOM05D005503 ORTHO05D008949 8.3e-13 77.4 84 53.6
Ah.04g151390 Amaranthus hybridus HOM05D005503 ORTHO05D008949 1.4e-12 76.6 77 54.5
Cc06_g18190 Coffea canephora HOM05D005503 ORTHO05D008949 1.4e-12 76.6 115 44.3
Lsat_1_v5_gn_9_32141 Lactuca sativa HOM05D005503 ORTHO05D008949 1.9e-12 76.3 86 48.8
SalBow6G3706 Salvia bowleyana HOM05D005503 ORTHO05D008949 1.9e-12 76.3 126 41.3
SalBow6G4155 Salvia bowleyana HOM05D005503 ORTHO05D008949 1.9e-12 76.3 126 41.3
Os05g0496000 Oryza sativa ssp. japonica HOM05D005503 ORTHO05D008949 3.2e-12 75.5 55 67.3
HanXRQChr10g0298211 Helianthus annuus HOM05D005503 ORTHO05D008949 4.1e-12 75.1 86 52.3
Sed0013086 Sechium edule HOM05D005503 ORTHO05D008949 4.1e-12 75.1 79 49.4
CDE09G0956 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 5.4e-12 74.7 78 55.1
DCAR_013615 Daucus carota HOM05D005503 ORTHO05D008949 5.4e-12 74.7 77 53.2
Nitab4.5_0001618g0220 Nicotiana tabacum HOM05D005503 ORTHO05D008949 5.4e-12 74.7 82 52.4
Oeu006918.1 Olea europaea HOM05D005503 ORTHO05D008949 9.2e-12 73.9 102 45.1
Peaxi162Scf00130g00911 Petunia axillaris HOM05D005503 ORTHO05D008949 1.2e-11 73.6 82 50.0
Solyc04g016420.3 Solanum lycopersicum HOM05D005503 ORTHO05D008949 1.2e-11 73.6 87 49.4
Sopen04g008520 Solanum pennellii HOM05D005503 ORTHO05D008949 1.2e-11 73.6 87 49.4
PGSC0003DMG400012701 Solanum tuberosum HOM05D005503 ORTHO05D008949 1.2e-11 73.6 87 49.4
Nitab4.5_0000826g0100 Nicotiana tabacum HOM05D005503 ORTHO05D008949 2.7e-11 72.4 82 51.2
CAN.G1237.11 Capsicum annuum HOM05D005503 ORTHO05D008949 6.0e-11 71.2 87 47.1
MELO3C009814.2 Cucumis melo HOM05D005503 ORTHO05D008949 6.0e-11 71.2 49 69.4
CsaV3_3G040800 Cucumis sativus L. HOM05D005503 ORTHO05D008949 6.0e-11 71.2 49 69.4
SGA_v2.0_scaffold69G23127 Striga asiatica HOM05D005503 ORTHO05D008949 1.0e-10 70.5 109 41.3
HPP92_018218 Vanilla planifolia HOM05D005503 ORTHO05D008949 1.3e-10 70.1 49 67.3
Mapoly0048s0063 Marchantia polymorpha HOM05D005503 ORTHO05D008949 1.7e-10 69.7 58 58.6
Dinv18679 Davidia involucrata HOM05D005503 ORTHO05D008949 3.0e-10 68.9 86 47.7
unitig_22.g6053 Utricularia gibba HOM05D005503 ORTHO05D008949 3.6e-08 62.0 93 40.9
vmacro21963 Vaccinium macrocarpon HOM05D005503 ORTHO05D008949 1.1e-07 60.5 51 60.8
Hma1.2p1_0005F.1_g004410 Hydrangea macrophylla HOM05D005503 ORTHO05D008949 5.8e-06 54.7 89 41.6


User provided reference genes

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