Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 0.0e+00 1212.6 604 100.0
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 0.0e+00 1175.2 616 96.1
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 8.4e-247 857.1 619 70.1
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.1e-246 856.7 615 70.4
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 3.0e-244 848.6 616 69.6
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 5.3e-241 837.8 613 68.4
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 2.6e-240 835.5 618 68.0
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 3.8e-239 831.6 620 67.9
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 2.4e-238 828.9 621 67.0
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 3.2e-238 828.6 616 68.2
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 7.1e-238 827.4 613 68.4
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 2.1e-237 825.9 619 67.4
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 7.9e-237 823.9 619 67.4
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 1.3e-236 823.2 615 67.0
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 3.0e-236 822.0 618 67.0
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.9e-235 819.3 640 65.3
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 4.8e-234 814.7 616 66.4
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 8.1e-234 813.9 615 67.6
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 7.6e-232 807.4 654 63.5
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 4.9e-231 804.7 614 65.3
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.1e-230 803.5 614 66.9
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 1.1e-230 803.5 615 67.5
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 6.0e-229 797.7 622 65.9
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 1.8e-228 796.2 624 63.5
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 5.1e-228 794.7 618 64.2
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 5.1e-228 794.7 622 65.6
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 1.1e-227 793.5 620 66.5
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 2.5e-227 792.3 614 65.0
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.3e-227 792.0 678 60.6
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 5.3e-225 784.6 614 64.7
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 6.9e-225 784.3 615 64.4
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 6.9e-225 784.3 612 64.5
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 1.2e-224 783.5 617 64.0
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 2.6e-224 782.3 634 63.2
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 3.4e-224 781.9 617 64.0
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 4.5e-224 781.6 613 64.1
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 5.8e-224 781.2 613 63.0
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.0e-223 780.4 612 63.4
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 1.3e-223 780.0 613 63.5
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.9e-223 778.9 606 64.2
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 1.1e-222 776.9 612 63.7
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 5.5e-222 774.6 618 65.4
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 7.1e-222 774.2 614 63.5
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 1.2e-221 773.5 620 62.7
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.6e-221 773.1 609 63.7
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 3.5e-221 771.9 618 63.4
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 4.6e-221 771.5 614 63.4
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 1.0e-220 770.4 615 63.6
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.5e-219 765.8 640 61.2
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 7.4e-219 764.2 642 61.2
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.3e-218 763.5 618 63.6
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 2.2e-218 762.7 661 59.8
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 2.8e-218 762.3 615 62.8
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 3.1e-217 758.8 615 61.0
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 3.1e-217 758.8 616 62.5
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 4.1e-217 758.4 616 62.0
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 2.6e-216 755.7 618 62.6
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 2.6e-216 755.7 615 62.0
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 5.9e-216 754.6 616 62.0
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.3e-215 753.4 618 62.1
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 1.3e-215 753.4 616 61.9
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 1.7e-215 753.1 614 62.4
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 3.8e-215 751.9 614 62.5
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.4e-214 750.0 616 62.2
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.9e-214 749.6 616 62.2
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 2.5e-214 749.2 632 60.8
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 5.5e-214 748.0 616 61.5
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.2e-213 746.9 616 61.7
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 1.6e-213 746.5 632 60.6
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 2.1e-213 746.1 616 61.5
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 3.6e-213 745.3 618 61.7
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 4.6e-213 745.0 616 62.0
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.3e-212 743.4 615 62.0
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 1.8e-212 743.0 616 61.9
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 2.3e-212 742.7 614 61.2
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 3.7e-210 735.3 570 64.2
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 4.1e-209 731.9 614 60.7
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 5.3e-209 731.5 615 57.6
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.1e-206 723.8 612 59.6
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 1.8e-204 716.5 624 58.5
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 1.8e-204 716.5 613 61.5
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.2e-199 699.5 612 60.5
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 2.5e-198 696.0 630 59.0
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.7e-197 692.6 514 66.9
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 7.4e-195 684.5 613 59.1
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 1.3e-194 683.7 615 56.3
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 2.6e-192 676.0 614 57.8
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 2.6e-187 659.4 481 68.8
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 1.6e-184 650.2 578 58.3
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 1.0e-183 647.5 430 73.5
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 7.2e-182 641.3 620 53.5
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.3e-178 630.6 903 42.5
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 3.7e-178 629.0 615 55.6
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 4.5e-176 622.1 429 72.3
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 3.4e-171 605.9 565 57.2
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 1.3e-170 604.0 638 51.3
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 2.2e-162 576.6 430 65.8
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 5.1e-151 538.9 612 47.4
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 3.1e-140 503.1 620 45.5
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 2.6e-131 473.4 497 47.1
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 3.0e-119 433.3 360 58.3
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 6.7e-119 432.2 394 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.0e-111 408.3 440 48.0
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.5e-110 404.4 322 60.9
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.8e-108 397.5 287 69.3
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 2.0e-107 394.0 324 61.4
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 5.1e-103 379.4 290 64.5
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 6.9e-92 342.4 279 64.5
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 5.3e-84 316.2 356 49.7
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 1.6e-80 304.7 239 61.1
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.1e-78 298.5 239 60.3
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.7e-77 294.7 281 55.5
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 1.6e-75 288.1 229 60.7
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 2.6e-75 287.3 233 64.8
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 9.7e-70 268.9 552 35.0
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 1.2e-62 245.4 372 38.7
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.5e-57 228.4 185 62.2
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 5.2e-55 219.9 429 36.4
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 9.2e-52 209.1 399 35.1
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-50 204.5 357 35.6
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 7.8e-43 179.5 352 37.2
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.2e-35 155.6 112 71.4
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.7e-35 154.5 122 64.8
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 3.0e-34 151.0 285 35.8
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 3.1e-31 141.0 101 68.3
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.3e-26 124.8 211 38.9
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.5e-25 121.3 216 38.0
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.1e-24 118.2 77 75.3
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.9e-20 105.1 127 48.0
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 6.0e-19 100.1 88 51.1
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.0e-18 99.4 84 60.7
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 4.4e-14 84.0 135 35.6
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 1.6e-11 75.5 307 23.1
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 1.6e-11 75.5 67 61.2
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 5.1e-10 70.5 68 45.6
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 6.6e-10 70.1 49 69.4
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 8.1e-08 63.2 68 41.2
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.0e-06 58.5 60 53.3
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 4.5e-06 57.4 47 61.7
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 5.8e-06 57.0 35 74.3
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 7.6e-06 56.6 40 67.5


User provided reference genes

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