Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 2236.5 1125 100.0
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1924.1 1124 84.6
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1867.8 1123 82.5
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1866.3 1077 85.9
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1860.9 1123 81.7
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1852.8 1123 82.5
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1852.8 1123 81.8
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1848.6 1123 82.0
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1843.9 1123 81.1
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1842.8 1132 81.4
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1842.4 1124 81.9
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1835.5 1124 81.3
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1832.8 1123 80.9
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1830.1 1123 80.9
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1827.8 1124 81.0
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1827.0 1119 81.0
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1823.1 1126 80.7
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1820.4 1124 80.9
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1820.1 1124 80.9
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1815.4 1124 80.5
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1812.3 1122 80.6
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1810.4 1125 80.5
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1808.1 1119 81.1
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1805.4 1127 79.5
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1803.5 1097 82.1
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1802.3 1121 79.6
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1801.9 1127 79.3
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1801.6 1119 79.4
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1800.0 1128 79.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1797.3 1126 79.7
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1791.5 1123 79.6
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1788.5 1128 79.5
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1788.5 1124 79.5
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1787.7 1124 80.2
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1785.8 1124 79.4
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1785.4 1122 79.0
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1784.2 1128 79.8
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1783.8 1122 79.5
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1782.3 1126 78.3
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1782.3 1126 79.0
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1781.1 1123 78.7
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1780.0 1139 78.8
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1777.7 1149 76.9
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1771.1 1185 76.0
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1769.2 1122 79.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1763.0 1139 78.2
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1759.2 1124 77.4
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1756.5 1126 77.3
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1756.1 1126 77.9
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1755.7 1124 77.9
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1755.3 1125 77.1
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1752.3 1127 77.1
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1751.5 1124 78.6
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1751.1 1124 78.6
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1748.0 1122 77.7
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1746.5 1124 77.7
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1739.2 1197 74.4
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1735.3 1124 75.4
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1733.0 1163 75.8
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1729.9 1124 77.6
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1727.6 1122 76.9
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1717.6 1080 79.4
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1714.9 1117 76.1
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1707.6 1190 73.2
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1702.6 1124 75.4
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1698.7 1126 74.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1696.8 1317 68.3
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1695.6 1072 78.9
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1694.5 1118 75.3
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1691.4 1117 75.1
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1677.1 1118 75.1
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1676.0 1037 80.2
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1668.3 1150 74.5
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1656.0 1123 74.6
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1644.8 1249 69.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1641.7 1118 73.3
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1636.3 1118 73.3
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1629.0 1118 72.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1626.3 1118 72.8
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1615.9 1119 72.4
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1607.4 1123 72.1
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1606.7 1123 72.0
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1593.6 1121 71.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1592.4 1121 71.5
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1588.9 1146 70.2
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1588.5 1122 70.8
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1588.5 1163 71.3
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1580.8 1122 70.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1572.4 1122 69.8
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1543.9 1163 68.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1530.8 1163 68.3
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1515.0 952 80.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1503.8 1118 68.6
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1437.2 1116 67.0
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1434.9 872 81.0
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1406.3 842 82.7
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1401.7 837 82.7
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1378.2 981 73.4
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1349.7 862 77.4
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1236.9 1127 58.9
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1186.0 783 75.4
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1185.6 814 71.7
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1158.7 684 84.5
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1148.3 1139 52.1
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 0.0e+00 1075.5 1123 51.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.1e-303 1047.0 1152 49.3
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 6.9e-303 1044.3 1519 42.1
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.5e-286 988.4 1147 46.4
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.4e-276 956.8 668 70.5
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 6.3e-272 941.4 1381 39.2
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 4.2e-260 902.1 529 86.4
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.4e-255 887.1 585 77.9
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 7.7e-254 881.3 675 68.0
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.2e-243 847.4 737 59.4
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.4e-209 732.6 429 84.8
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 4.9e-200 702.6 618 61.3
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 7.9e-198 695.3 451 75.2
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 2.0e-185 654.1 440 71.8
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 6.7e-181 639.0 590 54.6
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.2e-142 511.9 451 59.0
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.8e-139 500.7 379 71.8
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 9.8e-132 475.7 308 76.6
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 3.5e-121 440.7 333 73.0
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 6.2e-110 403.3 1212 28.4
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 6.0e-89 333.6 783 31.3
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 5.6e-87 327.0 1458 23.2
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.1e-81 308.5 295 56.6
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-78 299.3 189 77.2
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.8e-78 297.4 231 70.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 4.8e-70 270.8 199 75.9
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.4e-69 269.2 189 65.6
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 3.7e-62 244.6 294 47.6
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 9.0e-61 240.0 206 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.2e-59 235.3 316 39.9
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.2e-59 235.3 212 59.9
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 3.8e-59 234.6 178 62.4
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 8.5e-51 206.8 224 47.3
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 3.0e-48 198.4 217 56.2
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.0e-48 198.4 595 31.3
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 6.3e-46 190.7 217 53.5
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 8.5e-43 180.3 329 40.1
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.6e-41 176.0 189 50.3
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 9.1e-37 160.2 183 53.0
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.6e-36 158.7 722 23.5
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 8.8e-32 143.7 85 83.5
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 6.3e-30 137.5 87 79.3
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.1e-29 134.8 85 81.2
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.2e-26 125.2 162 49.4
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.4e-24 119.8 85 61.2
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.2e-20 106.7 65 75.4
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 4.5e-20 104.8 74 66.2
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.9e-20 104.4 138 48.6
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 5.0e-19 101.3 161 39.8
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 7.2e-18 97.4 67 65.7
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 3.6e-17 95.1 64 71.9
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.2e-16 91.3 60 75.0
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 2.2e-14 85.9 95 52.6
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.9e-14 84.7 60 65.0
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 4.1e-13 81.6 67 59.7
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.7e-12 79.0 56 67.9
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 4.5e-12 78.2 45 77.8
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.7e-11 76.3 57 57.9
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 1.9e-10 72.8 59 66.1
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.1e-09 69.3 43 72.1
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 2.8e-09 68.9 80 48.8
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 3.6e-09 68.6 49 65.3
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 6.1e-09 67.8 34 79.4
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.8e-08 66.2 48 68.8
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.2e-07 63.5 41 68.3


User provided reference genes

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