Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 2.5e-104 382.1 190 100.0
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 1.7e-97 359.4 190 94.2
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.9e-80 302.8 188 79.8
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 6.2e-79 297.7 188 77.7
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 1.4e-62 243.4 188 64.4
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 3.5e-58 228.8 184 56.5
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 5.6e-56 221.5 177 57.6
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 1.4e-54 216.9 177 58.8
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 3.1e-54 215.7 190 56.8
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 5.3e-54 214.9 190 54.7
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.2e-53 213.8 177 57.1
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 4.4e-53 211.8 191 55.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 4.4e-53 211.8 179 58.1
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 9.9e-53 210.7 190 54.2
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.7e-52 209.9 174 59.2
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.7e-52 209.9 184 56.5
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 2.2e-52 209.5 178 56.7
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.9e-52 209.1 184 54.9
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 6.4e-52 208.0 177 61.0
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.4e-52 207.6 182 54.9
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.4e-52 207.6 182 54.9
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.1e-51 207.2 190 55.3
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.4e-51 206.1 175 57.7
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 9.3e-51 204.1 184 53.8
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.3e-51 204.1 184 53.8
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.6e-50 203.4 173 59.5
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 2.1e-50 203.0 177 51.4
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 2.1e-50 203.0 187 53.5
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 3.5e-50 202.2 173 58.4
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.6e-50 201.8 184 53.3
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 7.9e-50 201.1 176 55.1
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 1.3e-49 200.3 190 52.1
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.7e-49 199.9 175 56.0
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.3e-49 199.5 176 56.8
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 3.9e-49 198.7 177 56.5
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.5e-48 196.8 187 52.9
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 1.9e-48 196.4 173 52.6
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.3e-48 195.7 186 52.7
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 9.6e-48 194.1 179 54.2
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.3e-47 193.7 174 56.9
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 2.1e-47 193.0 190 53.7
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 3.6e-47 192.2 178 56.7
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 4.8e-47 191.8 190 54.2
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 6.2e-47 191.4 172 57.0
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 6.2e-47 191.4 191 53.9
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.1e-47 191.0 176 54.0
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.1e-46 190.7 177 50.3
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.4e-46 190.3 174 56.9
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.4e-46 190.3 172 57.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 2.4e-46 189.5 219 47.5
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 2.4e-46 189.5 207 50.7
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 4.0e-46 188.7 179 54.2
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 5.3e-46 188.3 183 53.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 5.3e-46 188.3 183 53.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 5.3e-46 188.3 183 53.0
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 5.3e-46 188.3 172 55.8
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.2e-45 187.2 182 53.3
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.0e-45 186.4 185 50.8
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 2.0e-45 186.4 174 54.6
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 2.6e-45 186.0 190 52.1
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 3.4e-45 185.7 172 53.5
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 3.4e-45 185.7 187 50.3
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 5.8e-45 184.9 191 52.9
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 7.6e-45 184.5 174 53.4
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.3e-44 183.7 167 55.1
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 2.2e-44 183.0 188 51.6
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 2.2e-44 183.0 169 49.1
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.8e-44 182.2 176 50.6
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.4e-43 180.3 167 53.9
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.9e-43 179.9 167 53.9
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 5.5e-43 178.3 177 49.7
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.1e-43 177.9 177 49.7
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.2e-42 177.2 170 50.6
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.6e-42 176.8 177 46.9
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.7e-42 176.0 177 48.6
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 7.9e-42 174.5 172 51.2
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.0e-41 174.1 139 56.8
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.1e-40 170.6 172 48.8
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-40 169.9 123 62.6
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-40 169.9 170 52.4
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 2.5e-40 169.5 178 47.8
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-40 169.1 166 52.4
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.3e-40 168.7 166 52.4
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.3e-40 168.7 166 52.4
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.3e-40 168.7 166 52.4
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 5.6e-40 168.3 164 53.7
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.6e-40 168.3 166 51.8
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.6e-40 168.3 182 49.5
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.4e-40 167.9 166 51.8
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.4e-40 167.9 166 52.4
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.4e-40 167.9 166 51.8
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.4e-40 167.9 166 51.8
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 9.6e-40 167.5 185 48.1
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 9.6e-40 167.5 149 57.0
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.3e-39 167.2 176 48.3
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-39 166.8 166 51.8
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 2.1e-39 166.4 172 47.1
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 8.1e-39 164.5 179 49.2
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 8.1e-39 164.5 179 45.8
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-38 162.9 166 51.2
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 9.0e-38 161.0 176 51.7
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.2e-37 160.6 175 50.3
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 2.6e-37 159.5 182 51.1
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 1.7e-36 156.8 175 50.3
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.7e-36 156.8 182 47.3
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 2.9e-36 156.0 183 47.5
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 6.5e-36 154.8 176 47.7
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 6.5e-36 154.8 176 47.7
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 6.5e-36 154.8 168 50.6
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 6.5e-36 154.8 214 42.1
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.9e-35 153.3 168 48.8
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.9e-35 153.3 171 49.1
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 2.5e-35 152.9 175 48.0
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 2.5e-35 152.9 175 48.0
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.6e-34 150.2 175 46.9
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.6e-34 150.2 170 47.6
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.1e-34 149.8 170 47.6
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 2.7e-34 149.4 164 49.4
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 6.0e-34 148.3 143 55.2
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 6.0e-34 148.3 154 48.7
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 7.9e-34 147.9 118 60.2
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 8.7e-33 144.4 94 70.2
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 8.7e-33 144.4 136 51.5
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.5e-32 143.7 90 72.2
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 2.1e-31 139.8 176 42.0
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.3e-30 135.2 162 46.9
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.2e-29 134.0 172 43.6
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 3.8e-28 129.0 145 45.5
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.5e-27 126.3 96 62.5
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-27 125.9 136 48.5
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.7e-25 118.2 89 61.8
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.7e-25 117.9 85 63.5
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.7e-25 117.9 85 63.5
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-24 117.1 85 62.4
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.5e-24 117.1 128 50.8
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 9.0e-22 107.8 174 33.3
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.4e-17 94.0 75 61.3
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 3.3e-16 89.4 164 32.9
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 5.7e-16 88.6 179 31.8
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 2.0e-13 80.1 151 33.8
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.6e-13 79.7 175 33.1
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 4.2e-11 72.4 86 46.5
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-06 57.8 86 40.7
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.1e-06 56.2 77 40.3


User provided reference genes

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