Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G5106 Papaver somniferum HOM05D003529 ORTHO05D004106 4.9e-79 297.7 152 100.0
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 5.7e-27 124.8 142 50.7
TAR633G2691 Trochodendron aralioides HOM05D003529 ORTHO05D004106 2.8e-26 122.5 143 53.8
Ciclev10022679m.g Citrus clementina HOM05D003529 ORTHO05D004106 1.6e-24 116.7 144 50.0
Nn4g25678 Nelumbo nucifera HOM05D003529 ORTHO05D004106 7.7e-24 114.4 142 48.6
Dinv10056 Davidia involucrata HOM05D003529 ORTHO05D004106 3.8e-23 112.1 142 48.6
Hma1.2p1_0212F.1_g090160 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 4.2e-22 108.6 142 48.6
RcHm_v2.0_Chr7g0242001 Rosa chinensis HOM05D003529 ORTHO05D004106 9.5e-22 107.5 142 46.5
Atru.chr5.1067 Acer truncatum HOM05D003529 ORTHO05D004106 3.6e-21 105.5 146 47.3
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 3.6e-21 105.5 142 43.7
CANSAT25G0832 Cannabis sativa HOM05D003529 ORTHO05D004106 8.0e-21 104.4 147 44.2
CSS0011800 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 1.0e-20 104.0 141 46.8
MD03G1298600 Malus domestica HOM05D003529 ORTHO05D004106 3.0e-20 102.4 144 46.5
Nitab4.5_0002454g0010 Nicotiana tabacum HOM05D003529 ORTHO05D004106 3.0e-20 102.4 138 46.4
TAR636G2223 Trochodendron aralioides HOM05D003529 ORTHO05D004106 3.0e-20 102.4 154 44.2
Nitab4.5_0000116g0160 Nicotiana tabacum HOM05D003529 ORTHO05D004106 4.0e-20 102.1 138 44.2
Oeu006461.1 Olea europaea HOM05D003529 ORTHO05D004106 4.0e-20 102.1 142 44.4
Peaxi162Scf00001g00294 Petunia axillaris HOM05D003529 ORTHO05D004106 8.8e-20 100.9 142 43.0
Thecc.01G308200 Theobroma cacao HOM05D003529 ORTHO05D004106 8.8e-20 100.9 141 44.0
Prupe.8G268600 Prunus persica HOM05D003529 ORTHO05D004106 1.5e-19 100.1 155 43.9
PGR119G1167 Punica granatum HOM05D003529 ORTHO05D004106 1.5e-19 100.1 155 43.9
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 2.0e-19 99.8 140 45.0
Cc01_g21210 Coffea canephora HOM05D003529 ORTHO05D004106 2.6e-19 99.4 144 45.8
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 2.6e-19 99.4 141 44.0
Solyc09g075570.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 7.5e-19 97.8 141 44.7
Sopen09g030370 Solanum pennellii HOM05D003529 ORTHO05D004106 9.8e-19 97.4 141 44.7
ClCG09G005350 Citrullus lanatus HOM05D003529 ORTHO05D004106 1.7e-18 96.7 145 46.2
Aqoxy5G00808 Aquilegia oxysepala HOM05D003529 ORTHO05D004106 2.2e-18 96.3 142 42.3
PGSC0003DMG400031841 Solanum tuberosum HOM05D003529 ORTHO05D004106 2.2e-18 96.3 141 43.3
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 3.7e-18 95.5 149 43.0
Actinidia25830 Actinidia chinensis HOM05D001306 ORTHO05D001159 4.9e-18 95.1 141 46.8
TPR.G19765 Trifolium pratense HOM05D003529 ORTHO05D004106 6.3e-18 94.7 154 38.3
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 1.1e-17 94.0 138 43.5
Hma1.2p1_0494F.1_g165600 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 1.4e-17 93.6 146 45.9
SGA_v2.0_scaffold376G50256 Striga asiatica HOM05D003529 ORTHO05D004106 1.4e-17 93.6 141 40.4
Cfa005855 Carpinus fangiana HOM05D003529 ORTHO05D004106 1.8e-17 93.2 146 42.5
Psat6g162960 Pisum sativum HOM05D003529 ORTHO05D004106 2.4e-17 92.8 154 39.0
unitig_578.g16622 Utricularia gibba HOM05D003529 ORTHO05D004106 2.4e-17 92.8 142 43.0
CiPaw.08G092200 Carya illinoinensis HOM05D003529 ORTHO05D004106 3.1e-17 92.4 143 44.8
DCAR_002866 Daucus carota HOM05D003529 ORTHO05D004106 3.1e-17 92.4 143 40.6
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 4.1e-17 92.0 133 45.1
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 4.1e-17 92.0 133 45.1
Medtr1g087775 Medicago truncatula HOM05D003529 ORTHO05D004106 4.1e-17 92.0 154 37.0
MELO3C015948.2 Cucumis melo HOM05D003529 ORTHO05D004106 5.4e-17 91.7 142 45.8
Duzib133G0282 Durio zibethinus HOM05D003529 ORTHO05D004106 5.4e-17 91.7 142 43.0
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 7.0e-17 91.3 140 49.3
COL.COLO4_23282 Corchorus olitorius HOM05D003529 ORTHO05D004106 7.0e-17 91.3 141 44.0
CSS0040208 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 9.2e-17 90.9 140 41.4
Glyma.10G015800 Glycine max HOM05D003529 ORTHO05D004106 9.2e-17 90.9 151 37.1
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 9.2e-17 90.9 143 40.6
Ca_10307_v3 Cicer arietinum L. HOM05D003529 ORTHO05D004106 1.2e-16 90.5 152 40.8
Potri.002G200000 Populus trichocarpa HOM05D003529 ORTHO05D004106 1.6e-16 90.1 141 41.1
Sed0005967 Sechium edule HOM05D003529 ORTHO05D004106 1.6e-16 90.1 135 44.4
Sabra02G0158400 Salix brachista HOM05D003529 ORTHO05D004106 2.0e-16 89.7 142 40.8
Cc01_g04570 Coffea canephora HOM05D003529 ORTHO05D004106 2.7e-16 89.4 145 41.4
Lj2P1201T47 Lonicera japonica HOM05D003529 ORTHO05D004106 2.7e-16 89.4 141 41.8
QL12p028794 Quercus lobata HOM05D003529 ORTHO05D004106 2.7e-16 89.4 146 42.5
Actinidia21017 Actinidia chinensis HOM05D001306 ORTHO05D001159 3.5e-16 89.0 133 45.9
Duzib211G0236 Durio zibethinus HOM05D003529 ORTHO05D004106 3.5e-16 89.0 142 43.0
Lj5g0005836 Lotus japonicus HOM05D003529 ORTHO05D004106 5.9e-16 88.2 145 37.9
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 7.8e-16 87.8 138 44.2
Gorai.007G125400 Gossypium raimondii HOM05D003529 ORTHO05D004106 1.3e-15 87.0 142 42.3
Glyma.02G015200 Glycine max HOM05D003529 ORTHO05D004106 1.7e-15 86.7 143 35.7
Gohir.A12G127800 Gossypium hirsutum HOM05D003529 ORTHO05D004106 1.7e-15 86.7 143 43.4
Gohir.D12G131300 Gossypium hirsutum HOM05D003529 ORTHO05D004106 1.7e-15 86.7 143 43.4
Gorai.008G142600 Gossypium raimondii HOM05D003529 ORTHO05D004106 1.7e-15 86.7 143 43.4
Gohir.A11G112000 Gossypium hirsutum HOM05D003529 ORTHO05D004106 2.3e-15 86.3 142 41.5
Gohir.D11G117100 Gossypium hirsutum HOM05D003529 ORTHO05D004106 2.9e-15 85.9 142 41.5
CAN.G668.31 Capsicum annuum HOM05D003529 ORTHO05D004106 3.8e-15 85.5 153 39.9
Eucgr.K03517 Eucalyptus grandis HOM05D003529 ORTHO05D004106 3.8e-15 85.5 153 39.2
Lsat_1_v5_gn_8_165720 Lactuca sativa HOM05D003529 ORTHO05D004106 3.8e-15 85.5 135 40.0
CDE05G0935 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 5.0e-15 85.1 140 39.3
Dinv33090 Davidia involucrata HOM05D003529 ORTHO05D004106 5.0e-15 85.1 146 46.6
TAR362G0595 Trochodendron aralioides HOM05D003529 ORTHO05D004106 5.0e-15 85.1 142 45.1
EL10Ac7g17606 Beta vulgaris HOM05D003529 ORTHO05D004106 6.6e-15 84.7 158 39.2
TAR365G1145 Trochodendron aralioides HOM05D003529 ORTHO05D004106 6.6e-15 84.7 141 39.0
Duzib138G1135 Durio zibethinus HOM05D003529 ORTHO05D004106 8.6e-15 84.3 146 41.8
Manes.01G224100 Manihot esculenta HOM05D003529 ORTHO05D004106 8.6e-15 84.3 142 43.7
Phvul.007G217000 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 8.6e-15 84.3 149 36.2
Sc17g0003040 Simmondsia chinensis HOM05D003529 ORTHO05D004106 8.6e-15 84.3 145 37.9
FAN08G2441 Fragaria x ananassa HOM05D003529 ORTHO05D004106 1.1e-14 84.0 136 38.2
VMungo0720G2108 Vigna mungo HOM05D003529 ORTHO05D004106 1.1e-14 84.0 149 36.2
Nitab4.5_0001544g0150 Nicotiana tabacum HOM05D003529 ORTHO05D004106 1.9e-14 83.2 145 44.1
PSO675G3938 Papaver somniferum HOM05D003529 ORTHO05D004106 1.9e-14 83.2 157 40.8
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 2.5e-14 82.8 133 42.9
Lj1C21T4 Lonicera japonica HOM05D003529 ORTHO05D004106 2.5e-14 82.8 141 41.8
Oeu008332.1 Olea europaea HOM05D003529 ORTHO05D004106 2.5e-14 82.8 141 38.3
Haze_04994 Corylus avellana HOM05D003529 ORTHO05D004106 3.3e-14 82.4 146 38.4
CsaV3_7G029720 Cucumis sativus L. HOM05D003529 ORTHO05D004106 3.3e-14 82.4 142 43.0
Lalb_Chr21g0309411 Lupinus albus HOM05D003529 ORTHO05D004106 3.3e-14 82.4 149 39.6
Haze_04995 Corylus avellana HOM05D003529 ORTHO05D004106 4.3e-14 82.0 146 38.4
Eucgr.H01074 Eucalyptus grandis HOM05D003529 ORTHO05D004106 4.3e-14 82.0 153 39.2
DCAR_005779 Daucus carota HOM05D003529 ORTHO05D004106 2.1e-13 79.7 152 34.2
unitig_85.g27172 Utricularia gibba HOM05D002424 ORTHO05D002640 3.6e-13 79.0 143 37.8
Aqoxy2G02834 Aquilegia oxysepala HOM05D003529 ORTHO05D004106 6.1e-13 78.2 144 38.2
Sed0002432 Sechium edule HOM05D003529 ORTHO05D004106 8.0e-13 77.8 146 42.5
FvH4_5g28940 Fragaria vesca HOM05D003529 ORTHO05D004106 1.0e-12 77.4 144 39.6
ECA236G3228 Erigeron canadensis HOM05D003529 ORTHO05D004106 1.8e-12 76.6 132 37.9
Lj1g0023980 Lotus japonicus HOM05D003529 ORTHO05D004106 1.8e-12 76.6 152 38.8
PSO541G3234 Papaver somniferum HOM05D003529 ORTHO05D004106 1.8e-12 76.6 151 40.4
Rhsim01G0288700 Rhododendron simsii HOM05D003529 ORTHO05D004106 2.3e-12 76.3 135 40.7
Cpa.g.sc151.47 Carica papaya HOM05D003529 ORTHO05D004106 3.0e-12 75.9 129 38.8
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 5.2e-12 75.1 129 44.2
Nn1g06353 Nelumbo nucifera HOM05D003529 ORTHO05D004106 5.2e-12 75.1 93 47.3
AL4G47050 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 6.8e-12 74.7 129 42.6
Lalb_Chr02g0146621 Lupinus albus HOM05D003529 ORTHO05D004106 6.8e-12 74.7 142 38.0
Sed0025326 Sechium edule HOM05D003529 ORTHO05D004106 6.8e-12 74.7 136 39.7
Peaxi162Scf00147g00094 Petunia axillaris HOM05D003529 ORTHO05D004106 8.9e-12 74.3 144 35.4
FAN04G1108 Fragaria x ananassa HOM05D003529 ORTHO05D004106 1.2e-11 73.9 134 38.1
Nitab4.5_0005587g0040 Nicotiana tabacum HOM05D003529 ORTHO05D004106 1.5e-11 73.6 144 40.3
A05p00440 Brassica napus HOM05D003529 ORTHO05D004106 2.0e-11 73.2 129 41.9
BolC4t21684H Brassica oleracea HOM05D003529 ORTHO05D004106 2.0e-11 73.2 129 41.9
BraA05t19042Z Brassica rapa HOM05D003529 ORTHO05D004106 2.0e-11 73.2 129 41.9
AT2G47485 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 2.6e-11 72.8 129 42.6
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 2.6e-11 72.8 129 43.4
AUR62008739 Chenopodium quinoa HOM05D003529 ORTHO05D004106 2.6e-11 72.8 162 35.8
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 2.6e-11 72.8 127 39.4
C04p00390 Brassica napus HOM05D003529 ORTHO05D004106 3.4e-11 72.4 129 41.9
Zm00001eb285880 Zea mays HOM05D003529 ORTHO05D004106 3.4e-11 72.4 141 38.3
PGSC0003DMG400007290 Solanum tuberosum HOM05D003529 ORTHO05D004106 7.5e-11 71.2 145 39.3
Aa31LG10G16460 Aethionema arabicum HOM05D003529 ORTHO05D004106 9.8e-11 70.9 132 41.7
Sp4g29420 Schrenkiella parvula HOM05D003529 ORTHO05D004106 1.7e-10 70.1 129 41.9
AT3G62650 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 2.2e-10 69.7 132 40.2
AL5G45400 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 2.9e-10 69.3 132 40.2
BcaB02g08767 Brassica carinata HOM05D003529 ORTHO05D004106 2.9e-10 69.3 130 39.2
Carub.0004s3022 Capsella rubella HOM05D003529 ORTHO05D004106 2.9e-10 69.3 131 42.0
AUR62025498 Chenopodium quinoa HOM05D003529 ORTHO05D004106 4.9e-10 68.6 160 35.0
Phvul.001G211200 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 4.9e-10 68.6 146 39.0
Solyc06g009770.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 4.9e-10 68.6 147 38.8
CARHR172920 Cardamine hirsuta HOM05D003529 ORTHO05D004106 6.4e-10 68.2 132 39.4
Thhalv10006300m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 8.3e-10 67.8 132 40.9
C06p28320 Brassica napus HOM05D003529 ORTHO05D004106 1.1e-09 67.4 132 41.7
Psat3g124960 Pisum sativum HOM05D003529 ORTHO05D004106 1.4e-09 67.0 147 34.7
Sabra14G0092800 Salix brachista HOM05D003529 ORTHO05D004106 1.4e-09 67.0 141 34.0
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 1.8e-09 66.6 132 39.4
Glyma.03G217700 Glycine max HOM05D003529 ORTHO05D004106 1.8e-09 66.6 147 35.4
BcaC07g40741 Brassica carinata HOM05D003529 ORTHO05D004106 2.4e-09 66.2 132 40.2
BolC8t51321H Brassica oleracea HOM05D003529 ORTHO05D004106 2.4e-09 66.2 132 40.2
Sp5g00860 Schrenkiella parvula HOM05D003529 ORTHO05D004106 2.4e-09 66.2 132 40.9
A07p26020 Brassica napus HOM05D003529 ORTHO05D004106 3.2e-09 65.9 132 41.7
BolC6t38003H Brassica oleracea HOM05D003529 ORTHO05D004106 3.2e-09 65.9 132 41.7
BraA07t30250Z Brassica rapa HOM05D003529 ORTHO05D004106 3.2e-09 65.9 132 41.7
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 4.1e-09 65.5 132 39.4
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 4.1e-09 65.5 132 39.4
Carub.0005s2931 Capsella rubella HOM05D003529 ORTHO05D004106 4.1e-09 65.5 134 38.8
Potri.014G124900 Populus trichocarpa HOM05D003529 ORTHO05D004106 4.1e-09 65.5 142 33.1
C08p37400 Brassica napus HOM05D003529 ORTHO05D004106 7.0e-09 64.7 132 39.4
HanXRQChr04g0114591 Helianthus annuus HOM05D003529 ORTHO05D004106 7.0e-09 64.7 149 30.9
Sc05g0003300 Simmondsia chinensis HOM05D003529 ORTHO05D004106 7.0e-09 64.7 153 30.1
BcaB02g07332 Brassica carinata HOM05D003529 ORTHO05D004106 1.6e-08 63.5 133 40.6
BcaC08g45209 Brassica carinata HOM05D003529 ORTHO05D004106 1.6e-08 63.5 132 40.2
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 1.6e-08 63.5 132 34.8
Sopen06g004400 Solanum pennellii HOM05D003529 ORTHO05D004106 1.6e-08 63.5 146 37.7
THA.LOC104817473 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 1.6e-08 63.5 130 42.3
Lsat_1_v5_gn_9_601 Lactuca sativa HOM05D003529 ORTHO05D004106 2.0e-08 63.2 152 33.6
arahy.Tifrunner.gnm1.ann1.VI73GY Arachis hypogaea HOM05D003529 ORTHO05D004106 2.7e-08 62.8 140 35.7
HanXRQChr01g0000901 Helianthus annuus HOM05D003529 ORTHO05D004106 2.7e-08 62.8 131 30.5
SHI19869 Sapria himalayana HOM05D000024 ORTHO05D000007 4.6e-08 62.0 143 33.6
ECA248G1804 Erigeron canadensis HOM05D003529 ORTHO05D004106 7.8e-08 61.2 145 31.7
PGR044G1489 Punica granatum HOM05D003529 ORTHO05D004106 1.0e-07 60.8 143 34.3
Ca_29579_v3 Cicer arietinum L. HOM05D003529 ORTHO05D004106 1.7e-07 60.1 136 39.0
HanXRQChr04g0121431 Helianthus annuus HOM05D003529 ORTHO05D004106 1.7e-07 60.1 145 32.4
Psat3g020880 Pisum sativum HOM05D003529 ORTHO05D004106 1.7e-07 60.1 147 32.7
BcaB02g08109 Brassica carinata HOM05D003529 ORTHO05D004106 3.0e-07 59.3 133 36.8
BolC4t28764H Brassica oleracea HOM05D003529 ORTHO05D004106 3.0e-07 59.3 128 41.4
HanXRQChr10g0285441 Helianthus annuus HOM05D003529 ORTHO05D004106 3.9e-07 58.9 138 33.3
Os01g0308600 Oryza sativa ssp. japonica HOM05D003529 ORTHO05D004106 8.6e-07 57.8 145 35.2
Sabra16G0234400 Salix brachista HOM05D003529 ORTHO05D004106 8.6e-07 57.8 108 37.0
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 1.1e-06 57.4 148 30.4
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 1.9e-06 56.6 156 29.5
THA.LOC104802191 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 1.9e-06 56.6 122 36.9
Lalb_Chr18g0046821 Lupinus albus HOM05D003529 ORTHO05D004106 2.5e-06 56.2 146 37.0
TWI36G0365 Tripterygium wilfordii HOM05D003529 ORTHO05D004106 2.5e-06 56.2 129 34.9
Rhsim13G0007600 Rhododendron simsii HOM05D003529 ORTHO05D004106 4.3e-06 55.5 133 34.6
Zm00001eb130390 Zea mays HOM05D003529 ORTHO05D004106 4.3e-06 55.5 163 30.1


User provided reference genes

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