Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 2.6e-244 848.6 535 100.0
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 3.1e-229 798.5 535 95.7
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 5.4e-173 611.7 479 74.9
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 2.7e-172 609.4 471 74.5
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.0e-171 607.4 470 74.5
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.1e-170 604.0 483 68.5
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.6e-169 600.1 470 74.9
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.8e-168 596.7 467 74.3
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 5.3e-168 595.1 440 77.5
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.2e-167 594.0 469 74.8
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.2e-167 594.0 456 74.8
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 1.5e-167 593.6 470 74.9
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.5e-167 593.6 478 73.2
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 3.4e-167 592.4 476 72.5
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 3.4e-167 592.4 472 74.8
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 4.5e-167 592.0 469 73.6
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 5.8e-167 591.7 427 81.3
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 7.6e-167 591.3 468 73.5
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 6.4e-166 588.2 477 73.4
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.9e-165 586.6 473 73.2
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 2.4e-165 586.3 484 71.7
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 3.2e-165 585.9 461 74.8
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.0e-163 580.9 504 69.0
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.8e-163 580.1 427 78.2
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.8e-163 580.1 453 75.5
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.1e-162 577.4 495 65.1
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 9.6e-162 574.3 466 74.5
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 3.7e-161 572.4 468 70.9
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 3.1e-160 569.3 381 82.7
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 4.0e-160 568.9 473 73.4
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 9.0e-160 567.8 457 73.1
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 2.2e-158 563.1 450 72.0
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.8e-158 562.4 476 71.6
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 3.8e-158 562.4 482 69.5
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 4.9e-158 562.0 476 72.1
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.4e-157 560.5 482 70.3
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 7.1e-157 558.1 473 70.8
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.7e-156 556.2 400 79.2
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 6.0e-156 555.1 470 71.3
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.0e-156 555.1 464 73.3
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 6.0e-156 555.1 472 69.9
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.3e-155 553.9 469 71.6
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 2.3e-155 553.1 443 73.4
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 3.0e-155 552.7 424 75.9
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 6.7e-155 551.6 481 70.5
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.1e-154 550.8 482 69.5
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 5.6e-154 548.5 539 58.4
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 2.8e-153 546.2 462 70.6
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 2.8e-153 546.2 473 69.3
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.1e-152 544.3 468 69.0
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 6.9e-152 541.6 471 68.6
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.5e-151 540.4 466 67.6
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.6e-151 539.7 464 70.7
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 7.6e-151 538.1 453 71.3
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.7e-150 537.0 460 70.4
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.9e-150 535.4 468 69.2
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 8.4e-150 534.6 480 68.1
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.9e-149 533.5 400 77.2
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-149 532.3 472 68.2
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 7.1e-149 531.6 457 69.6
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 9.3e-149 531.2 485 67.0
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.7e-148 529.6 472 67.8
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.0e-147 527.7 472 67.6
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 2.3e-147 526.6 470 68.5
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 3.0e-147 526.2 469 68.9
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.9e-146 523.5 482 66.8
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.9e-146 523.5 485 59.8
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 2.5e-146 523.1 438 72.6
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.3e-146 522.3 485 66.2
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 2.2e-145 520.0 469 68.0
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 2.2e-145 520.0 468 69.4
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 6.3e-145 518.5 498 63.1
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.4e-144 517.3 438 70.3
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.8e-144 516.9 465 68.0
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.8e-144 516.9 465 68.0
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.8e-144 516.9 479 61.6
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.2e-143 514.2 470 67.4
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 1.2e-143 514.2 356 76.7
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.5e-143 512.3 439 69.2
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 6.5e-142 508.4 459 64.9
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.4e-141 507.3 481 62.8
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-141 506.9 439 68.6
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.9e-141 506.9 383 78.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.5e-141 506.5 470 66.0
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 9.3e-141 504.6 459 65.1
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 9.3e-141 504.6 440 68.9
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.2e-140 504.2 464 65.3
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.2e-140 504.2 464 65.3
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-140 503.4 470 66.0
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 2.7e-140 503.1 484 62.8
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 7.9e-140 501.5 474 64.1
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.0e-139 501.1 459 64.9
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.0e-139 501.1 459 64.9
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 5.1e-139 498.8 459 65.1
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-138 497.7 487 63.7
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 2.5e-138 496.5 435 67.4
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 5.7e-138 495.4 435 67.6
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 7.4e-138 495.0 503 63.2
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.3e-137 494.2 490 63.7
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.2e-137 493.4 465 63.7
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-136 491.1 437 67.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.9e-136 488.4 390 74.1
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.5e-135 487.3 476 64.1
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 6.1e-132 475.3 462 65.6
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 3.0e-131 473.0 418 69.9
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 8.8e-131 471.5 476 63.0
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.3e-126 457.6 460 63.0
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.9e-125 453.8 469 62.3
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.6e-124 450.7 424 66.3
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 3.6e-124 449.5 470 61.3
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 3.9e-123 446.0 433 63.7
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 5.0e-118 429.1 453 60.7
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.4e-117 424.9 344 75.3
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 6.7e-115 418.7 420 63.1
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 2.0e-114 417.2 454 60.8
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 5.7e-114 415.6 389 62.2
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 7.5e-114 415.2 529 50.3
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 2.2e-110 403.7 371 67.9
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 8.0e-108 395.2 356 63.5
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.7e-102 377.5 443 55.3
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 4.0e-99 366.3 281 65.8
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.5e-98 364.4 329 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.4e-96 357.1 391 54.2
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.9e-94 350.1 339 67.8
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 4.3e-93 346.3 342 65.8
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 5.2e-91 339.3 600 41.3
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.0e-87 327.4 390 53.3
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 3.5e-79 300.1 474 42.8
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.9e-77 294.3 395 42.5
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 5.6e-77 292.7 266 62.4
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 3.4e-74 283.5 287 66.2
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-53 214.5 152 67.1
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 9.0e-51 205.7 131 78.6
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.4e-49 199.1 141 66.0
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-48 198.0 141 65.2
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-48 196.8 141 65.2
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 4.3e-45 186.8 181 57.5
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.0e-43 179.1 168 55.4
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.2e-41 174.5 134 61.2
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.9e-41 173.3 134 61.2
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.7e-36 157.1 95 83.2
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.1e-35 154.1 128 59.4
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.6e-34 151.0 171 49.1
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.1e-31 141.4 107 67.3
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 6.0e-31 139.8 307 33.6
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-26 124.8 75 76.0
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.6e-23 115.2 67 85.1
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 2.3e-22 111.3 78 67.9
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 3.1e-19 100.9 313 29.1
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.6e-18 97.8 121 48.8
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 4.5e-18 97.1 53 86.8
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 6.1e-15 86.7 55 72.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.3e-12 79.0 71 63.4
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.1e-11 75.9 52 73.1
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 5.3e-11 73.6 122 41.0
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.4e-08 65.5 57 59.6
Nn3g16272 Nelumbo nucifera HOM05D004623 ORTHO05D005100 2.7e-07 61.2 84 41.7


User provided reference genes

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