Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 3.9e-137 491.5 255 100.0
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.9e-131 472.6 256 96.9
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 6.5e-84 314.7 256 66.4
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 6.1e-82 308.1 241 66.4
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 8.8e-81 304.3 244 66.8
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.4e-80 302.4 241 63.1
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.4e-80 302.0 241 63.5
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.3e-79 300.4 245 63.7
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.7e-79 300.1 268 60.1
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 2.2e-79 299.7 246 65.9
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 3.7e-79 298.9 241 63.1
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 4.8e-79 298.5 250 63.6
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.1e-78 297.4 246 62.6
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.1e-78 297.4 246 64.2
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.4e-78 296.2 254 63.0
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 7.0e-78 294.7 256 61.3
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.2e-77 293.9 247 61.9
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.2e-77 293.9 244 62.7
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 2.0e-77 293.1 245 63.3
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.7e-77 292.7 245 63.7
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 7.7e-77 291.2 241 61.8
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.3e-76 289.7 242 62.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.9e-76 289.3 245 60.4
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 3.8e-76 288.9 240 62.1
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.0e-76 288.5 247 65.2
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 6.6e-76 288.1 243 60.9
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.1e-75 287.3 245 60.8
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.9e-75 286.6 245 60.8
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.5e-75 286.2 245 61.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.5e-75 286.2 242 62.0
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.5e-75 285.0 241 60.6
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 5.5e-75 285.0 228 64.5
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.5e-75 285.0 242 61.2
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.6e-74 283.5 249 61.0
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.1e-74 283.1 247 61.5
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.8e-74 282.7 242 60.7
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 3.6e-74 282.3 240 59.2
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 8.0e-74 281.2 242 60.7
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.0e-74 281.2 242 59.9
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.0e-73 280.8 246 61.4
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 6.8e-73 278.1 248 60.9
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 1.5e-72 276.9 232 62.5
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.0e-72 276.6 231 62.3
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 3.4e-72 275.8 240 60.0
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.4e-72 275.4 248 60.5
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 7.5e-72 274.6 224 62.9
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.3e-71 273.9 243 58.4
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.2e-71 273.1 254 56.7
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 2.2e-71 273.1 246 60.2
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.9e-71 271.9 274 55.1
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 6.3e-71 271.6 242 59.1
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 8.3e-71 271.2 226 61.1
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 8.3e-71 271.2 227 64.8
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.8e-70 270.0 231 61.0
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.8e-70 270.0 256 57.8
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.4e-70 269.6 246 57.7
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 4.1e-70 268.9 242 57.9
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 7.0e-70 268.1 242 57.4
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 7.0e-70 268.1 241 57.3
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 9.2e-70 267.7 248 56.0
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 1.6e-69 266.9 241 58.1
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.7e-69 266.2 242 57.9
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 5.9e-69 265.0 257 55.3
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 7.8e-69 264.6 235 59.1
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.3e-68 263.8 233 59.2
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.3e-68 263.8 234 60.3
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.7e-68 263.5 241 57.3
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.5e-67 260.4 248 56.0
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 2.5e-67 259.6 228 59.2
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 3.3e-67 259.2 247 56.7
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 4.3e-67 258.8 244 59.4
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.1e-66 256.5 225 59.6
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.8e-66 256.1 248 55.2
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 3.6e-66 255.8 253 55.7
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 4.7e-66 255.4 248 56.0
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 8.0e-66 254.6 257 54.9
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.0e-65 254.2 243 58.0
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.8e-65 253.4 249 54.6
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.8e-65 253.4 245 58.0
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.8e-65 253.4 232 60.3
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.3e-65 253.1 242 55.0
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 5.2e-65 251.9 248 56.9
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 6.8e-65 251.5 240 54.6
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 6.8e-65 251.5 234 56.8
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 6.8e-65 251.5 243 56.0
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 6.8e-65 251.5 243 56.0
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.2e-64 250.8 243 56.4
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.5e-64 250.4 251 54.2
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.5e-64 250.4 254 53.9
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 5.8e-64 248.4 241 58.1
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 7.5e-64 248.1 242 54.1
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.3e-63 247.3 244 56.1
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 1.3e-63 247.3 273 50.2
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.9e-63 246.1 245 54.7
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 3.7e-63 245.7 253 53.4
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 8.3e-63 244.6 233 54.5
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.1e-62 244.2 264 51.1
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 2.4e-62 243.0 189 66.1
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 5.4e-62 241.9 279 48.4
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.6e-61 240.4 274 49.3
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.7e-61 239.6 275 49.8
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 3.5e-61 239.2 242 54.5
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 4.6e-61 238.8 230 55.2
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 4.6e-61 238.8 224 54.0
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 6.0e-61 238.4 229 55.5
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.0e-60 237.7 255 52.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.3e-60 237.3 195 66.7
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.1e-59 234.2 256 51.6
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.1e-59 234.2 256 51.6
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.5e-59 233.8 256 52.3
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 2.1e-58 229.9 249 51.8
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 3.6e-58 229.2 166 69.9
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 8.1e-58 228.0 254 50.4
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 8.1e-58 228.0 254 50.4
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 8.1e-58 228.0 190 60.5
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.1e-57 227.6 251 52.2
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.3e-57 226.5 227 53.7
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.2e-56 224.2 241 51.9
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.5e-53 212.6 224 53.1
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 3.6e-50 202.6 168 60.7
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 3.6e-50 202.6 232 49.6
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 4.7e-50 202.2 170 59.4
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 1.4e-49 200.7 206 52.9
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 2.0e-48 196.8 239 48.5
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 4.4e-48 195.7 264 45.8
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.0e-44 184.5 242 47.9
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 6.6e-44 181.8 232 47.0
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 6.6e-44 181.8 145 62.8
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 4.7e-42 175.6 159 56.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 1.8e-41 173.7 143 57.3
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 9.9e-40 167.9 166 53.6
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.6e-37 160.6 127 57.5
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 5.3e-33 145.6 228 39.9
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 5.8e-32 142.1 201 46.8
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 4.9e-31 139.0 206 40.8
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.9e-30 137.1 232 35.8
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 5.1e-28 129.0 115 60.9
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 5.1e-28 129.0 113 55.8
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.9e-27 127.1 82 69.5
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.3e-27 125.2 161 45.3
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 2.1e-26 123.6 160 45.0
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-26 123.6 161 45.3
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 3.6e-26 122.9 145 46.2
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.4e-22 110.2 190 40.0
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 5.4e-22 109.0 114 48.2
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 5.4e-22 109.0 114 48.2
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 5.4e-22 109.0 114 48.2
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 2.1e-18 97.1 58 84.5
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 3.4e-16 89.7 118 50.0
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 5.5e-14 82.4 104 47.1
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 1.3e-12 77.8 98 46.9
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.3e-10 71.2 248 28.2
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 3.7e-10 69.7 201 29.4
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 8.2e-10 68.6 83 49.4
PRCOL_00003248 Prasinoderma coloniale HOM05D004631 ORTHO05D005223 2.4e-09 67.0 146 28.8
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 5.3e-09 65.9 44 65.9
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.4e-08 63.2 57 54.4
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 9.3e-06 55.1 144 25.7
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 9.3e-06 55.1 155 28.4


User provided reference genes

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