Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 0.0e+00 1111.3 543 100.0
PSO782G2448 Papaver somniferum HOM05D005919 ORTHO05D007176 7.5e-271 936.8 464 98.1
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 4.3e-242 841.3 543 73.8
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 5.4e-237 824.3 525 73.7
Nn2g12541 Nelumbo nucifera HOM05D005919 ORTHO05D007176 9.2e-229 797.0 540 71.7
Actinidia02641 Actinidia chinensis HOM05D005919 ORTHO05D007176 1.5e-226 789.6 531 71.6
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 1.6e-225 786.2 542 68.6
Thecc.09G160900 Theobroma cacao HOM05D005919 ORTHO05D007176 2.4e-224 782.3 506 71.5
Prupe.1G097400 Prunus persica HOM05D005919 ORTHO05D007176 3.1e-224 781.9 546 67.6
GSVIVG01023723001 Vitis vinifera HOM05D005919 ORTHO05D007176 6.9e-224 780.8 545 69.0
CANSAT11G0901 Cannabis sativa HOM05D005919 ORTHO05D007176 9.9e-223 776.9 528 69.9
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 1.3e-222 776.5 531 70.1
Atru.chr7.495 Acer truncatum HOM05D005919 ORTHO05D007176 2.2e-222 775.8 512 71.7
Duzib150G0612 Durio zibethinus HOM05D005919 ORTHO05D007176 1.1e-221 773.5 515 70.3
Ciclev10007971m.g Citrus clementina HOM05D005919 ORTHO05D007176 1.2e-220 770.0 513 71.7
FAN12G0251 Fragaria x ananassa HOM05D005919 ORTHO05D007176 7.8e-220 767.3 506 70.2
RcHm_v2.0_Chr4g0404951 Rosa chinensis HOM05D005919 ORTHO05D007176 1.3e-219 766.5 546 66.1
Manes.15G095400 Manihot esculenta HOM05D005919 ORTHO05D007176 1.7e-219 766.1 538 67.3
FvH4_4g09660 Fragaria vesca HOM05D005919 ORTHO05D007176 2.3e-219 765.8 506 70.4
TWI53G0694 Tripterygium wilfordii HOM05D005919 ORTHO05D007176 8.7e-219 763.8 506 71.5
FAN12G4285 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.6e-218 760.4 513 69.2
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 9.6e-218 760.4 513 69.4
Eucgr.C00228 Eucalyptus grandis HOM05D005919 ORTHO05D007176 3.1e-216 755.4 506 70.0
Potri.018G098700 Populus trichocarpa HOM05D005919 ORTHO05D007176 6.9e-216 754.2 541 67.7
Hma1.2p1_1531F.1_g289233 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.2e-215 753.4 516 68.2
FAN22G0736 Fragaria x ananassa HOM05D005919 ORTHO05D007176 2.0e-215 752.7 518 68.5
Lj4g0016840 Lotus japonicus HOM05D005919 ORTHO05D007176 3.4e-215 751.9 500 70.4
Gohir.A06G079400 Gossypium hirsutum HOM05D005919 ORTHO05D007176 7.6e-215 750.7 519 68.8
VMungo1215G1350 Vigna mungo HOM05D005919 ORTHO05D007176 7.6e-215 750.7 529 67.1
Gorai.010G092100 Gossypium raimondii HOM05D005919 ORTHO05D007176 9.9e-215 750.4 515 68.5
MD16G1262500 Malus domestica HOM05D005919 ORTHO05D007176 1.7e-214 749.6 544 65.8
PGSC0003DMG401011224 Solanum tuberosum HOM05D005919 ORTHO05D007176 2.9e-214 748.8 504 68.3
Medtr4g129500 Medicago truncatula HOM05D005919 ORTHO05D007176 8.4e-214 747.3 502 69.7
PGR042G2595 Punica granatum HOM05D005919 ORTHO05D007176 1.1e-213 746.9 544 66.2
TPR.G5290 Trifolium pratense HOM05D005919 ORTHO05D007176 1.1e-213 746.9 527 67.9
HanXRQChr09g0244361 Helianthus annuus HOM05D005919 ORTHO05D007176 1.9e-213 746.1 525 67.2
Solyc07g006330.2 Solanum lycopersicum HOM05D005919 ORTHO05D007176 7.1e-213 744.2 504 68.3
Lalb_Chr12g0199061 Lupinus albus HOM05D005919 ORTHO05D007176 1.6e-212 743.0 516 69.2
CAN.G1870.2 Capsicum annuum HOM05D005919 ORTHO05D007176 2.7e-212 742.3 505 67.5
CSS0021645 Camellia sinensis var. sinensis HOM05D005919 ORTHO05D007176 1.8e-211 739.6 520 68.8
Phvul.003G151000 Phaseolus vulgaris HOM05D005919 ORTHO05D007176 1.8e-211 739.6 529 66.7
Glyma.13G091700 Glycine max HOM05D005919 ORTHO05D007176 6.7e-211 737.6 537 66.5
Ca_21183_v3 Cicer arietinum L. HOM05D005919 ORTHO05D007176 8.7e-211 737.3 487 70.4
Cc06_g14010 Coffea canephora HOM05D005919 ORTHO05D007176 3.3e-210 735.3 539 65.3
ECA240G3021 Erigeron canadensis HOM05D005919 ORTHO05D007176 4.3e-210 734.9 531 65.0
EL10Ac1g01561 Beta vulgaris HOM05D005919 ORTHO05D007176 2.8e-209 732.3 515 66.6
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 2.8e-209 732.3 497 68.4
Psat4g048080 Pisum sativum HOM05D005919 ORTHO05D007176 2.8e-209 732.3 503 69.2
ClCG09G013740 Citrullus lanatus HOM05D005919 ORTHO05D007176 3.7e-209 731.9 519 65.7
Migut.K00275 Erythranthe guttata HOM05D005919 ORTHO05D007176 4.8e-209 731.5 545 65.5
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 1.8e-208 729.6 520 67.7
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 5.3e-208 728.0 515 68.3
AUR62013597 Chenopodium quinoa HOM05D005919 ORTHO05D007176 6.9e-208 727.6 504 66.3
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 9.0e-208 727.2 520 67.5
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 1.2e-207 726.9 507 67.5
Nitab4.5_0005985g0040 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.6e-207 725.7 514 65.6
MSTRG.26243 Avicennia marina HOM05D005919 ORTHO05D007176 3.4e-207 725.3 543 63.2
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 7.6e-207 724.2 520 67.3
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 1.7e-206 723.0 543 63.9
Nitab4.5_0005551g0020 Nicotiana tabacum HOM05D005919 ORTHO05D007176 2.5e-205 719.2 514 66.0
Lsat_1_v5_gn_7_51941 Lactuca sativa HOM05D005919 ORTHO05D007176 4.2e-205 718.4 501 66.7
CsaV3_1G028860 Cucumis sativus L. HOM05D005919 ORTHO05D007176 3.5e-204 715.3 526 64.1
MELO3C005285.2 Cucumis melo HOM05D005919 ORTHO05D007176 1.9e-202 709.5 543 62.2
arahy.Tifrunner.gnm1.ann1.F7IW15 Arachis hypogaea HOM05D005919 ORTHO05D007176 3.3e-202 708.8 513 66.5
Sc02g0003990 Simmondsia chinensis HOM05D005919 ORTHO05D007176 4.3e-202 708.4 540 62.6
ATR0824G006 Amborella trichopoda HOM05D005919 ORTHO05D007176 9.6e-202 707.2 521 63.1
Peaxi162Scf00525g00821 Petunia axillaris HOM05D005919 ORTHO05D007176 4.8e-201 704.9 499 65.7
AL6G25620 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 1.1e-200 703.7 518 63.1
Carub.0006s1300 Capsella rubella HOM05D005919 ORTHO05D007176 1.8e-200 703.0 518 63.1
Aa31LG11G14640 Aethionema arabicum HOM05D005919 ORTHO05D007176 6.9e-200 701.0 513 63.5
BcaNung03092 Brassica carinata HOM05D005919 ORTHO05D007176 6.9e-200 701.0 523 64.2
Oeu035674.1 Olea europaea HOM05D005919 ORTHO05D007176 2.6e-199 699.1 504 65.7
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 3.4e-199 698.7 542 62.9
Thhalv10013155m.g Eutrema salsugineum HOM05D005919 ORTHO05D007176 1.7e-198 696.4 524 63.4
BcaC03g13443 Brassica carinata HOM05D005919 ORTHO05D007176 3.8e-198 695.3 504 64.9
HPP92_021127 Vanilla planifolia HOM05D005919 ORTHO05D007176 2.5e-197 692.6 502 64.9
BolC2t06667H Brassica oleracea HOM05D005919 ORTHO05D007176 3.2e-197 692.2 511 64.6
BraA02t05246Z Brassica rapa HOM05D005919 ORTHO05D007176 5.5e-197 691.4 533 62.9
arahy.Tifrunner.gnm1.ann1.WJA0QS Arachis hypogaea HOM05D005919 ORTHO05D007176 1.2e-196 690.3 487 67.1
A02p02750 Brassica napus HOM05D005919 ORTHO05D007176 6.1e-196 688.0 518 63.7
Sp6g29230 Schrenkiella parvula HOM05D005919 ORTHO05D007176 1.3e-195 686.8 518 63.5
Dinv43316 Davidia involucrata HOM05D005919 ORTHO05D007176 2.3e-195 686.0 460 71.3
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 1.5e-194 683.3 523 64.6
SHI02981 Sapria himalayana HOM05D005919 ORTHO05D007176 3.8e-190 668.7 476 66.0
AT5G14850 Arabidopsis thaliana HOM05D005919 ORTHO05D007176 6.5e-190 667.9 495 63.2
C02p07360 Brassica napus HOM05D005919 ORTHO05D007176 3.9e-187 658.7 482 64.7
Dinv41305 Davidia involucrata HOM05D005919 ORTHO05D007176 8.8e-187 657.5 425 74.1
Zm00001eb229730 Zea mays HOM05D005919 ORTHO05D007176 9.7e-186 654.1 513 60.0
SGA_v2.0_scaffold7G04062 Striga asiatica HOM05D005919 ORTHO05D007176 5.9e-175 618.2 508 60.8
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 8.0e-172 607.8 528 53.6
DCAR_011759 Daucus carota HOM05D005919 ORTHO05D007176 2.0e-170 603.2 420 69.3
Os01g0580100 Oryza sativa ssp. japonica HOM05D005919 ORTHO05D007176 4.4e-170 602.1 492 59.8
Hund26692 Selenicereus undatus HOM05D005919 ORTHO05D007176 7.0e-168 594.7 574 52.8
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.2e-166 589.7 573 51.5
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.2e-166 589.7 573 51.5
SalBow1G6099 Salvia bowleyana HOM05D005919 ORTHO05D007176 2.5e-165 586.3 427 64.4
SMO172G0226 Selaginella moellendorffii HOM05D005919 ORTHO05D007176 8.8e-163 577.8 469 58.0
Oeu031853.1 Olea europaea HOM05D005919 ORTHO05D007176 4.5e-159 565.5 393 67.9
Zm00001eb229670 Zea mays HOM05D005919 ORTHO05D007176 4.0e-155 552.4 439 59.2
Sopen07g002420 Solanum pennellii HOM05D005919 ORTHO05D007176 8.8e-155 551.2 380 67.6
Hma1.2p1_1531F.1_g289236 Hydrangea macrophylla HOM05D005919 ORTHO05D007176 1.7e-153 547.0 425 62.1
CiPaw.07G186600 Carya illinoinensis HOM05D005919 ORTHO05D007176 2.8e-153 546.2 379 67.8
CDE02G0068 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 2.1e-148 530.0 404 60.9
CARHR198500 Cardamine hirsuta HOM05D005919 ORTHO05D007176 4.4e-146 522.3 382 66.8
Dinv42785 Davidia involucrata HOM05D005919 ORTHO05D007176 4.9e-145 518.8 344 70.6
FAN07G1390 Fragaria x ananassa HOM05D005919 ORTHO05D007176 1.6e-135 487.3 483 53.4
SGA_v2.0_scaffold87G27166 Striga asiatica HOM05D005919 ORTHO05D007176 1.5e-130 470.7 494 51.8
vmacro13072 Vaccinium macrocarpon HOM05D005919 ORTHO05D007176 2.0e-130 470.3 526 51.1
Gohir.D06G079000 Gossypium hirsutum HOM05D005919 ORTHO05D007176 9.8e-130 468.0 503 48.9
MD13G1260800 Malus domestica HOM05D005919 ORTHO05D007176 7.1e-120 435.3 304 67.4
COL.COLO4_04535 Corchorus olitorius HOM05D005919 ORTHO05D007176 8.4e-113 411.8 281 69.4
MCO09G503 Micromonas commoda HOM05D005919 ORTHO05D007176 1.3e-86 324.7 457 38.3
arahy.Tifrunner.gnm1.ann1.IETZ0A Arachis hypogaea HOM05D005919 ORTHO05D007176 1.3e-81 308.1 226 66.4
arahy.Tifrunner.gnm1.ann1.I3IQB6 Arachis hypogaea HOM05D005919 ORTHO05D007176 9.4e-72 275.4 240 57.1
Glyma.17G068567 Glycine max HOM05D005919 ORTHO05D007176 2.6e-58 230.7 189 59.8
arahy.Tifrunner.gnm1.ann1.8I3VMK Arachis hypogaea HOM05D005919 ORTHO05D007176 2.3e-54 217.6 204 55.4
Actinidia20955 Actinidia chinensis HOM05D005919 ORTHO05D007176 2.5e-48 197.6 130 70.0
Glyma.17G068633 Glycine max HOM05D005919 ORTHO05D007176 3.2e-48 197.2 174 59.2
Sabra18G0085400 Salix brachista HOM05D005919 ORTHO05D007176 3.6e-47 193.7 142 62.7
CDE02G3325 Ceratophyllum demersum HOM05D005919 ORTHO05D007176 1.8e-46 191.4 127 66.9
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 2.2e-44 184.5 499 29.7
Psat4g010400 Pisum sativum HOM05D005919 ORTHO05D007176 3.1e-43 180.6 110 72.7
AUR62026693 Chenopodium quinoa HOM05D005919 ORTHO05D007176 2.0e-42 177.9 118 65.3
GSVIVG01023746001 Vitis vinifera HOM05D005919 ORTHO05D007176 1.5e-29 135.2 89 67.4
Zm00001eb050560 Zea mays HOM05D005919 ORTHO05D007176 9.8e-29 132.5 107 61.7
Zm00001eb260780 Zea mays HOM05D005919 ORTHO05D007176 9.8e-29 132.5 107 61.7
Zm00001eb302550 Zea mays HOM05D005919 ORTHO05D007176 9.8e-29 132.5 107 61.7
DCAR_017944 Daucus carota HOM05D005919 ORTHO05D007176 1.8e-27 128.3 133 52.6
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 6.8e-22 109.8 75 65.3
Actinidia15384 Actinidia chinensis HOM05D005919 ORTHO05D007176 5.8e-21 106.7 86 55.8
AL1G16380 Arabidopsis lyrata HOM05D005919 ORTHO05D007176 3.5e-18 97.4 81 54.3
SMO145G0125 Selaginella moellendorffii HOM05D009274 ORTHO05D011512 2.0e-13 81.6 294 27.6
Psat4g048040 Pisum sativum HOM05D005919 ORTHO05D007176 3.2e-11 74.3 42 78.6
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 7.1e-11 73.2 283 26.5
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 1.3e-09 68.9 316 26.9
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 2.3e-09 68.2 214 31.3
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 5.1e-09 67.0 315 25.4
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 1.5e-08 65.5 230 28.7
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 5.6e-08 63.5 313 24.0
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 7.3e-08 63.2 263 28.1
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 1.2e-07 62.4 236 28.4
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 1.2e-07 62.4 264 25.8
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 1.6e-07 62.0 291 25.8
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.6e-07 62.0 231 28.6
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 2.1e-07 61.6 236 27.1
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 2.8e-07 61.2 220 28.2
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 2.8e-07 61.2 282 25.5
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 2.8e-07 61.2 214 29.9
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 4.7e-07 60.5 262 22.5
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 4.7e-07 60.5 237 26.2
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 8.1e-07 59.7 277 23.5
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 1.1e-06 59.3 316 23.7
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 1.1e-06 59.3 243 28.8
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 1.8e-06 58.5 269 24.9
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 2.3e-06 58.2 281 24.6
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 2.3e-06 58.2 267 24.7
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 2.3e-06 58.2 220 28.6
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 2.3e-06 58.2 174 23.6
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 3.1e-06 57.8 106 35.8
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 3.1e-06 57.8 209 25.8
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 3.1e-06 57.8 252 23.0
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 4.0e-06 57.4 264 24.2
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 5.2e-06 57.0 263 23.6
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.8e-06 56.6 247 24.3
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 6.8e-06 56.6 210 26.2
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 6.8e-06 56.6 101 32.7
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 6.8e-06 56.6 215 28.8
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 6.8e-06 56.6 284 24.6
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 8.9e-06 56.2 209 23.9


User provided reference genes

Program Settings