Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 3.7e-188 661.4 335 100.0
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 3.3e-184 648.3 335 98.2
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 3.3e-112 409.1 336 63.1
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 7.7e-109 397.9 322 64.0
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 3.6e-106 389.0 337 60.2
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 2.6e-104 382.9 258 71.3
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 9.8e-104 380.9 337 59.6
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 6.3e-103 378.3 315 60.3
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 1.0e-100 370.9 302 60.6
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 2.3e-100 369.8 337 58.5
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 2.5e-99 366.3 315 61.3
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 2.5e-99 366.3 334 56.9
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 4.2e-99 365.5 300 59.0
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 9.5e-99 364.4 340 58.8
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 6.1e-98 361.7 316 58.9
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 5.2e-97 358.6 340 57.1
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 8.8e-97 357.8 295 61.4
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 4.4e-96 355.5 272 61.8
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 9.8e-96 354.4 329 55.9
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 2.2e-95 353.2 315 58.1
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 1.4e-94 350.5 268 60.8
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 2.4e-94 349.7 274 63.9
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 7.0e-94 348.2 338 53.6
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 9.2e-94 347.8 275 61.5
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 5.9e-93 345.1 271 59.8
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 7.8e-93 344.7 274 62.8
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 1.3e-92 344.0 415 46.7
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 3.8e-92 342.4 338 53.8
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 5.0e-92 342.0 317 58.4
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 6.6e-92 341.7 317 54.6
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 8.6e-92 341.3 284 58.5
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 8.6e-92 341.3 277 59.6
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 1.1e-91 340.9 277 59.2
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 2.5e-91 339.7 355 52.1
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 2.5e-91 339.7 276 59.8
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 5.6e-91 338.6 334 53.0
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 7.3e-91 338.2 300 55.3
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 7.3e-91 338.2 337 55.2
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 1.6e-90 337.0 333 52.0
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 2.1e-90 336.7 329 54.1
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 2.8e-90 336.3 343 53.9
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 2.8e-90 336.3 282 59.2
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 3.0e-89 332.8 293 57.7
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 3.0e-89 332.8 312 56.7
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 1.5e-88 330.5 292 56.8
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 1.5e-88 330.5 300 54.0
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 3.4e-88 329.3 293 57.3
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 3.4e-88 329.3 299 56.2
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 4.4e-88 328.9 326 54.9
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 4.4e-88 328.9 295 56.9
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 5.7e-88 328.6 301 53.8
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 1.3e-87 327.4 275 59.3
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 2.2e-87 326.6 338 52.4
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 3.7e-87 325.9 272 59.6
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 6.4e-87 325.1 275 59.3
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 6.4e-87 325.1 275 59.3
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 6.4e-87 325.1 270 60.0
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 8.3e-87 324.7 313 54.0
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 8.3e-87 324.7 302 55.6
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 8.3e-87 324.7 302 55.6
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 8.3e-87 324.7 295 56.9
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 1.4e-86 323.9 272 58.5
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 1.4e-86 323.9 276 58.3
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 1.4e-86 323.9 276 58.3
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 1.4e-86 323.9 275 59.3
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 2.4e-86 323.2 276 58.0
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 2.4e-86 323.2 295 56.3
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 3.2e-86 322.8 324 53.4
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 7.0e-86 321.6 275 60.4
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 9.2e-86 321.2 300 55.3
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 2.7e-85 319.7 279 58.4
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 1.0e-84 317.8 307 55.4
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 1.0e-84 317.8 241 62.2
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 1.3e-84 317.4 327 52.0
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 5.0e-84 315.5 242 61.2
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 1.5e-83 313.9 304 55.6
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 3.3e-83 312.8 313 52.7
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 5.6e-83 312.0 304 55.3
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 5.6e-83 312.0 321 50.5
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 2.1e-82 310.1 354 51.1
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 2.1e-82 310.1 309 53.4
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 2.8e-82 309.7 284 55.6
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 4.7e-82 308.9 284 55.6
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 6.2e-82 308.5 293 54.9
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 8.0e-82 308.1 342 51.8
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 1.1e-81 307.8 275 57.1
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 2.3e-81 306.6 311 54.0
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 5.2e-81 305.4 287 54.0
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 6.8e-81 305.1 343 51.0
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 1.2e-80 304.3 320 51.2
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 1.5e-80 303.9 222 63.5
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 9.8e-80 301.2 277 55.6
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 1.3e-79 300.8 299 53.5
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 2.4e-78 296.6 273 53.1
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 2.7e-77 293.1 311 52.1
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 1.2e-74 284.3 253 54.2
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 1.6e-74 283.9 390 43.6
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 4.7e-74 282.3 295 51.5
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 1.7e-71 273.9 246 56.5
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 2.7e-69 266.5 318 47.8
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 4.1e-62 242.7 236 54.2
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 1.7e-60 237.3 253 49.0
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.1e-54 218.0 286 45.1
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 1.1e-54 218.0 249 45.4
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 5.4e-54 215.7 234 48.3
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 9.3e-54 214.9 321 39.9
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 6.0e-53 212.2 246 44.3
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 6.0e-53 212.2 159 62.3
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 6.2e-42 175.6 194 47.9
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 2.4e-41 173.7 129 64.3
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 9.0e-41 171.8 147 59.9
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 1.3e-39 167.9 144 59.0
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 3.8e-39 166.4 136 61.8
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 7.6e-32 142.1 112 64.3
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.1e-30 138.3 93 69.9
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 1.3e-28 131.3 120 56.7
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 1.1e-25 121.7 147 40.1
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 3.1e-25 120.2 106 54.7
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 6.9e-25 119.0 91 62.6
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 1.3e-23 114.8 122 57.4
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.2e-23 114.0 141 43.3
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 1.2e-21 108.2 132 46.2
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 6.1e-21 105.9 74 66.2
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 6.7e-20 102.4 255 27.8
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 8.8e-20 102.1 76 65.8
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 2.2e-18 97.4 246 28.5
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 9.1e-17 92.0 156 41.7
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 3.4e-16 90.1 237 31.2
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.7e-15 87.8 87 43.7
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 3.8e-15 86.7 105 40.0
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 5.0e-15 86.3 137 34.3
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.9e-14 84.3 91 51.6
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.5e-14 84.0 91 50.5
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 3.2e-14 83.6 89 52.8
Gohir.A11G235800 Gossypium hirsutum HOM05D006013 ORTHO05D007383 9.4e-14 82.0 246 29.3
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 1.6e-13 81.3 233 30.0
CsaV3_4G013250 Cucumis sativus L. HOM05D006013 ORTHO05D007383 2.1e-13 80.9 233 30.0
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 4.7e-13 79.7 63 60.3
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 4.7e-13 79.7 237 29.5
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 7.9e-13 79.0 63 63.5
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 1.4e-12 78.2 245 28.6
ClCG04G005340 Citrullus lanatus HOM05D006013 ORTHO05D007383 3.0e-12 77.0 295 28.1
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.9e-12 76.6 48 66.7
Duzib106G1826 Durio zibethinus HOM05D006013 ORTHO05D007383 8.8e-12 75.5 246 27.6
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 1.1e-11 75.1 246 29.3
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 2.0e-11 74.3 170 33.5
MBI01_g13088_MAGBIO Magnolia biondii HOM05D006013 ORTHO05D007383 4.4e-11 73.2 247 27.5
Peaxi162Scf00463g00021 Petunia axillaris HOM05D006013 ORTHO05D007383 7.4e-11 72.4 247 28.7
Nitab4.5_0000626g0030 Nicotiana tabacum HOM05D006013 ORTHO05D007383 9.7e-11 72.0 234 28.2
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 1.3e-10 71.6 237 28.3
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 1.3e-10 71.6 236 28.0
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 3.7e-10 70.1 321 27.1
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 4.8e-10 69.7 316 26.6
Nitab4.5_0000394g0050 Nicotiana tabacum HOM05D006013 ORTHO05D007383 4.8e-10 69.7 305 25.9
Pp3c3_4160 Physcomitrium patens HOM05D006013 ORTHO05D007383 1.1e-09 68.6 236 27.1
Os07g0573800 Oryza sativa ssp. japonica HOM05D006013 ORTHO05D007383 1.4e-09 68.2 245 28.2
Glyma.19G112500 Glycine max HOM05D006013 ORTHO05D007383 2.4e-09 67.4 306 26.1
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 5.3e-09 66.2 240 27.5
SMO358G0221 Selaginella moellendorffii HOM05D006013 ORTHO05D007383 5.3e-09 66.2 237 28.7
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 9.1e-09 65.5 63 54.0
FvH4_6g36141 Fragaria vesca HOM05D002283 ORTHO05D005725 1.2e-08 65.1 84 48.8
HanXRQChr03g0090471 Helianthus annuus HOM05D006013 ORTHO05D007383 1.2e-08 65.1 248 25.8
Zm00001eb325150 Zea mays HOM05D006013 ORTHO05D007383 3.4e-08 63.5 245 27.3
MCO13G417 Micromonas commoda HOM05D003731 ORTHO05D004429 1.0e-07 62.0 215 29.3
Glyma.08G221400 Glycine max HOM05D003731 ORTHO05D004429 1.4e-06 58.2 223 28.7
Migut.K00008 Erythranthe guttata HOM05D006013 ORTHO05D007383 1.9e-06 57.8 329 24.9
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 3.2e-06 57.0 326 25.5
Phvul.008G254200 Phaseolus vulgaris HOM05D003731 ORTHO05D004429 4.2e-06 56.6 223 28.3
HPP92_018481 Vanilla planifolia HOM05D006013 ORTHO05D007383 4.2e-06 56.6 335 25.4
Glyma.07G020600 Glycine max HOM05D003731 ORTHO05D004429 5.5e-06 56.2 225 27.6
VMungo0647G1366 Vigna mungo HOM05D003731 ORTHO05D004429 7.2e-06 55.8 223 28.3
arahy.Tifrunner.gnm1.ann1.C9Z78F Arachis hypogaea HOM05D003731 ORTHO05D004429 9.4e-06 55.5 223 27.8
arahy.Tifrunner.gnm1.ann1.T57K28 Arachis hypogaea HOM05D003731 ORTHO05D004429 9.4e-06 55.5 223 27.8


User provided reference genes

Program Settings