Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 0.0e+00 1426.8 713 100.0
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 0.0e+00 1394.4 713 97.9
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 7.8e-260 900.6 719 65.6
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 1.7e-243 846.3 716 61.2
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.5e-226 790.0 734 57.8
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 4.3e-226 788.5 714 56.7
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 2.4e-216 756.1 712 53.9
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 9.0e-216 754.2 713 55.1
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 1.5e-215 753.4 692 55.8
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.5e-213 745.0 715 54.7
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 9.3e-213 744.2 711 55.1
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 3.0e-211 739.2 699 55.1
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 5.9e-207 724.9 717 52.9
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 3.8e-206 722.2 711 53.3
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 5.5e-205 718.4 697 54.1
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 5.5e-205 718.4 714 52.9
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 5.5e-205 718.4 714 51.5
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 1.2e-204 717.2 675 55.1
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 2.1e-204 716.5 716 52.5
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 2.1e-204 716.5 712 51.7
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 3.0e-203 712.6 700 55.0
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 2.8e-201 706.1 699 51.5
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 4.5e-199 698.7 708 52.7
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 5.9e-199 698.4 706 51.3
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.5e-198 694.5 665 53.4
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 9.4e-197 691.0 669 54.0
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 2.7e-196 689.5 709 52.6
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 6.1e-196 688.3 707 50.9
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 2.3e-195 686.4 714 50.6
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 4.4e-194 682.2 714 51.0
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 2.8e-193 679.5 708 52.5
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 8.2e-193 677.9 709 52.0
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 8.2e-193 677.9 718 49.6
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.1e-192 677.6 709 52.3
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.8e-192 676.8 714 51.1
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 5.3e-192 675.2 727 49.9
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 9.1e-192 674.5 710 49.9
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.6e-191 673.7 645 56.3
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.6e-191 672.9 703 50.4
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 2.2e-190 669.8 706 51.4
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 5.0e-190 668.7 665 51.9
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.6e-188 662.5 734 48.4
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.8e-187 660.2 716 49.6
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 2.3e-187 659.8 701 51.1
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 6.7e-187 658.3 720 49.4
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 8.2e-185 651.4 686 52.0
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 3.1e-184 649.4 702 49.0
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 5.3e-184 648.7 703 49.2
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 4.5e-183 645.6 723 47.7
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.3e-182 644.0 712 48.5
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 3.8e-182 642.5 702 48.3
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 5.0e-182 642.1 712 48.6
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 8.5e-182 641.3 753 49.0
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 1.1e-181 641.0 707 48.4
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 5.5e-181 638.6 709 48.1
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 6.1e-180 635.2 709 48.0
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 1.8e-176 623.6 696 48.0
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 4.1e-176 622.5 750 46.4
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 4.1e-176 622.5 706 46.6
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 1.2e-175 620.9 696 48.0
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 1.6e-175 620.5 698 47.9
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 2.7e-175 619.8 674 48.8
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 5.9e-175 618.6 702 46.6
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 4.2e-173 612.5 718 47.4
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 2.1e-172 610.1 725 46.2
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.7e-172 609.8 716 46.2
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 6.1e-172 608.6 708 48.6
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 2.3e-171 606.7 683 47.4
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 4.0e-171 605.9 709 50.2
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.5e-170 604.0 716 46.1
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 5.7e-170 602.1 698 46.4
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 1.3e-169 600.9 706 46.0
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 1.7e-169 600.5 698 47.3
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 3.7e-169 599.4 708 46.6
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 3.5e-167 592.8 547 56.7
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.3e-166 590.9 701 46.2
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 3.8e-166 589.3 679 48.3
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 1.5e-165 587.4 703 46.2
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 2.5e-165 586.6 664 47.3
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.3e-165 586.3 706 46.0
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 9.5e-165 584.7 703 46.2
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 5.2e-163 578.9 708 45.6
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 6.8e-163 578.6 705 44.8
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 1.8e-160 570.5 768 42.4
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.2e-160 569.7 645 47.8
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 5.4e-160 568.9 707 43.7
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 2.5e-157 560.1 668 45.7
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 6.8e-155 552.0 668 45.1
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 6.0e-151 538.9 720 42.2
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 1.3e-150 537.7 708 41.9
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 3.6e-148 529.6 769 41.7
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 4.9e-145 519.2 666 42.5
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.3e-142 510.4 759 40.3
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.9e-142 509.6 775 39.9
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 9.5e-141 505.0 689 43.4
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 1.6e-140 504.2 705 42.0
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.4e-139 501.1 636 45.0
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.6e-138 496.9 609 46.0
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 3.4e-138 496.5 756 40.1
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 2.9e-137 493.4 564 47.2
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.9e-136 490.7 685 40.0
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 7.8e-127 458.8 644 42.4
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 1.3e-126 458.0 515 48.9
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 3.3e-125 453.4 528 47.5
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 3.7e-116 423.3 497 47.1
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 6.2e-116 422.5 520 47.7
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 5.3e-115 419.5 521 47.2
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.9e-112 411.0 392 56.6
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.3e-102 378.3 707 33.5
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.2e-100 369.0 483 43.9
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 9.0e-99 365.5 521 43.2
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.0e-97 362.1 740 33.5
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 6.5e-89 332.8 280 55.7
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 9.4e-88 328.9 371 45.3
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 6.7e-86 322.8 261 57.5
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 3.8e-81 307.0 248 58.1
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 2.7e-71 274.2 330 46.7
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 2.0e-69 268.1 215 58.1
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 2.0e-69 268.1 298 45.0
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.6e-63 248.4 290 46.9
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 4.7e-47 193.7 113 72.6
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 4.1e-35 154.1 127 62.2
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 4.9e-28 130.6 155 46.5
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 5.1e-25 120.6 127 49.6
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 6.2e-23 113.6 209 36.8
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 8.1e-23 113.2 132 47.7
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.8e-22 112.1 142 48.6
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 8.9e-22 109.8 254 34.3
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.5e-16 92.4 85 49.4
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 1.8e-14 85.5 124 43.5
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 2.4e-11 75.1 129 36.4
MBI19_g17438_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 4.2e-11 74.3 56 60.7
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 6.9e-06 57.0 107 29.9


User provided reference genes

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