Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G3897 Papaver somniferum HOM05D007878 ORTHO05D010022 2.1e-276 955.3 549 100.0
TAR374G1173 Trochodendron aralioides HOM05D007878 ORTHO05D010022 1.2e-90 338.2 606 44.9
Nn4g23313 Nelumbo nucifera HOM05D007878 ORTHO05D010022 5.0e-89 332.8 601 41.1
Aqoxy3G03537 Aquilegia oxysepala HOM05D007878 ORTHO05D010022 2.3e-78 297.4 607 38.6
Prupe.5G199300 Prunus persica HOM05D007878 ORTHO05D010022 3.4e-77 293.5 615 36.7
FAN13G2185 Fragaria x ananassa HOM05D007878 ORTHO05D010022 8.3e-76 288.9 609 36.9
Duzib084G0698 Durio zibethinus HOM05D007878 ORTHO05D010022 1.2e-74 285.0 601 36.9
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 2.3e-73 280.8 574 37.1
MBI16_g14990_MAGBIO Magnolia biondii HOM05D007878 ORTHO05D010022 5.0e-73 279.6 579 38.5
CiPaw.11G048800 Carya illinoinensis HOM05D007878 ORTHO05D010022 6.1e-71 272.7 577 37.1
FAN18G1316 Fragaria x ananassa HOM05D007878 ORTHO05D010022 3.0e-70 270.4 609 35.6
Potri.015G061500 Populus trichocarpa HOM05D007878 ORTHO05D010022 4.4e-69 266.5 545 36.7
Cfa019282 Carpinus fangiana HOM05D007878 ORTHO05D010022 7.5e-69 265.8 596 35.4
Actinidia04859 Actinidia chinensis HOM05D007878 ORTHO05D010022 9.2e-67 258.8 593 35.8
Actinidia09234 Actinidia chinensis HOM05D007878 ORTHO05D010022 7.8e-66 255.8 589 35.5
Atru.chr9.783 Acer truncatum HOM05D007878 ORTHO05D010022 1.1e-64 251.9 576 34.4
RcHm_v2.0_Chr7g0182231 Rosa chinensis HOM05D007878 ORTHO05D010022 5.6e-64 249.6 607 34.4
Manes.14G082500 Manihot esculenta HOM05D007878 ORTHO05D010022 4.4e-61 240.0 595 33.9
PGR083G0831 Punica granatum HOM05D007878 ORTHO05D010022 9.8e-61 238.8 597 34.3
FvH4_5g14430 Fragaria vesca HOM05D007878 ORTHO05D010022 2.2e-60 237.7 609 33.5
MD14G1206000 Malus domestica HOM05D007878 ORTHO05D010022 4.9e-60 236.5 583 33.4
CiPaw.11G048500 Carya illinoinensis HOM05D007878 ORTHO05D010022 1.6e-58 231.5 583 32.9
TWI60G1109 Tripterygium wilfordii HOM05D007878 ORTHO05D010022 6.0e-58 229.6 597 35.0
Cc04_g14870 Coffea canephora HOM05D007878 ORTHO05D010022 7.8e-58 229.2 600 32.8
Dinv38757 Davidia involucrata HOM05D007878 ORTHO05D010022 7.8e-58 229.2 602 33.2
Thecc.03G095300 Theobroma cacao HOM05D007878 ORTHO05D010022 3.9e-57 226.9 597 33.3
Oeu031812.2 Olea europaea HOM05D007878 ORTHO05D010022 5.2e-54 216.5 575 32.0
Manes.06G088500 Manihot esculenta HOM05D007878 ORTHO05D010022 7.5e-53 212.6 588 35.5
Ciclev10024608m.g Citrus clementina HOM05D007878 ORTHO05D010022 2.4e-51 207.6 584 31.0
Nn3g17364 Nelumbo nucifera HOM05D007878 ORTHO05D010022 2.1e-50 204.5 414 37.4
DCAR_016585 Daucus carota HOM05D007878 ORTHO05D010022 3.0e-49 200.7 570 31.2
Sed0013205 Sechium edule HOM05D007878 ORTHO05D010022 3.0e-49 200.7 576 31.8
CAN.G479.49 Capsicum annuum HOM05D007878 ORTHO05D010022 3.3e-48 197.2 591 30.8
COL.COLO4_38427 Corchorus olitorius HOM05D007878 ORTHO05D010022 3.3e-48 197.2 602 31.9
MD06G1198500 Malus domestica HOM05D007878 ORTHO05D010022 7.3e-48 196.1 570 35.3
Gohir.A03G068300 Gossypium hirsutum HOM05D007878 ORTHO05D010022 4.7e-47 193.4 589 32.1
Gohir.D03G094900 Gossypium hirsutum HOM05D007878 ORTHO05D010022 2.6e-45 187.6 589 31.6
Peaxi162Scf00274g00029 Petunia axillaris HOM05D007878 ORTHO05D010022 5.8e-45 186.4 571 30.5
GSVIVG01007952001 Vitis vinifera HOM05D007878 ORTHO05D010022 5.8e-45 186.4 483 31.5
Sopen03g034610 Solanum pennellii HOM05D007878 ORTHO05D010022 2.2e-44 184.5 586 30.4
PGSC0003DMG400024662 Solanum tuberosum HOM05D007878 ORTHO05D010022 1.2e-42 178.7 585 30.1
ClCG06G015920 Citrullus lanatus HOM05D007878 ORTHO05D010022 6.6e-41 172.9 574 31.5
Solyc03g115620.2 Solanum lycopersicum HOM05D007878 ORTHO05D010022 3.3e-40 170.6 586 29.5
Cpa.g.sc13.307 Carica papaya HOM05D007878 ORTHO05D010022 4.3e-40 170.2 536 33.4
QL10p018347 Quercus lobata HOM05D007878 ORTHO05D010022 4.3e-40 170.2 516 31.8
Gorai.003G099100 Gossypium raimondii HOM05D007878 ORTHO05D010022 5.2e-38 163.3 561 30.3
Nitab4.5_0002756g0040 Nicotiana tabacum HOM05D007878 ORTHO05D010022 8.9e-38 162.5 586 29.0
MELO3C017199.2 Cucumis melo HOM05D007878 ORTHO05D010022 3.4e-37 160.6 578 30.3
CsaV3_1G002630 Cucumis sativus L. HOM05D007878 ORTHO05D010022 4.4e-37 160.2 578 29.9
Nitab4.5_0001211g0090 Nicotiana tabacum HOM05D007878 ORTHO05D010022 5.4e-35 153.3 532 27.8
Phvul.003G187300 Phaseolus vulgaris HOM05D007878 ORTHO05D010022 7.1e-35 152.9 589 27.2
CANSAT80G1712 Cannabis sativa HOM05D007878 ORTHO05D010022 2.7e-34 151.0 597 28.1
Eucgr.B00555 Eucalyptus grandis HOM05D007878 ORTHO05D010022 3.9e-33 147.1 487 29.4
Oeu052465.1 Olea europaea HOM05D007878 ORTHO05D010022 9.6e-32 142.5 570 27.5
Oeu052466.1 Olea europaea HOM05D007878 ORTHO05D010022 9.6e-32 142.5 570 27.5
Ca_21797_v3 Cicer arietinum L. HOM05D007878 ORTHO05D010022 6.2e-31 139.8 519 27.9
ATR0730G174 Amborella trichopoda HOM05D007878 ORTHO05D010022 3.1e-30 137.5 609 27.9
Medtr4g109150 Medicago truncatula HOM05D007878 ORTHO05D010022 3.1e-30 137.5 586 27.0
Glyma.17G103300 Glycine max HOM05D007878 ORTHO05D010022 5.3e-30 136.7 584 27.2
Oeu046990.1 Olea europaea HOM05D007878 ORTHO05D010022 4.4e-29 133.7 524 28.6
HanXRQChr05g0157141 Helianthus annuus HOM05D007878 ORTHO05D010022 7.6e-29 132.9 343 34.1
Haze_07666 Corylus avellana HOM05D007878 ORTHO05D010022 3.8e-28 130.6 515 29.5
Oeu047269.3 Olea europaea HOM05D007878 ORTHO05D010022 1.9e-27 128.3 530 29.8
arahy.Tifrunner.gnm1.ann1.3W98EY Arachis hypogaea HOM05D007878 ORTHO05D010022 6.6e-25 119.8 576 25.5
Lj4g0012809 Lotus japonicus HOM05D007878 ORTHO05D010022 1.1e-24 119.0 579 25.6
Migut.I00229 Erythranthe guttata HOM05D007878 ORTHO05D010022 1.3e-23 115.5 444 27.9
ECA246G4297 Erigeron canadensis HOM05D007878 ORTHO05D010022 4.0e-22 110.5 432 30.8
arahy.Tifrunner.gnm1.ann1.QT4JJ4 Arachis hypogaea HOM05D007878 ORTHO05D010022 4.9e-20 103.6 510 24.9
DCAR_021514 Daucus carota HOM05D007878 ORTHO05D010022 1.2e-18 99.0 344 30.2
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 2.7e-18 97.8 582 25.3
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 6.7e-17 93.2 583 24.0
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 9.6e-16 89.4 405 26.4
Atru.chr9.308 Acer truncatum HOM05D007878 ORTHO05D010022 2.1e-15 88.2 191 34.0
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 2.8e-15 87.8 585 23.6
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 4.8e-15 87.0 579 23.5
DCAR_026030 Daucus carota HOM05D000094 ORTHO05D003883 9.0e-14 82.8 267 29.6
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 1.2e-13 82.4 570 24.2
CsaV3_3G004170 Cucumis sativus L. HOM05D001827 ORTHO05D001790 1.5e-13 82.0 593 23.9
MELO3C014113.2 Cucumis melo HOM05D001827 ORTHO05D001790 2.0e-13 81.6 593 24.1
QL05p067335 Quercus lobata HOM05D001827 ORTHO05D001790 2.0e-13 81.6 570 23.9
Oeu046939.1 Olea europaea HOM05D001827 ORTHO05D001790 7.6e-13 79.7 573 23.6
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 1.0e-12 79.3 574 23.7
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 2.9e-12 77.8 398 25.1
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 2.9e-12 77.8 608 22.5
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 3.8e-12 77.4 574 23.3
RcHm_v2.0_Chr5g0076481 Rosa chinensis HOM05D001827 ORTHO05D001790 8.4e-12 76.3 579 23.3
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 8.4e-12 76.3 582 23.0
CSS0027094 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 1.9e-11 75.1 398 25.9
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 4.2e-11 73.9 582 22.5
CSS0029238 Camellia sinensis var. sinensis HOM05D000957 ORTHO05D000754 5.5e-11 73.6 505 25.7
Haze_07028 Corylus avellana HOM05D001827 ORTHO05D001790 7.1e-11 73.2 546 23.6
SEGI_06346 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.6e-10 72.0 452 23.7
Haze_09842 Corylus avellana HOM05D001827 ORTHO05D001790 2.1e-10 71.6 397 25.7
arahy.Tifrunner.gnm1.ann1.5CFI8R Arachis hypogaea HOM05D001827 ORTHO05D001790 6.0e-10 70.1 580 22.8
SGA_v2.0_scaffold42G15974 Striga asiatica HOM05D001827 ORTHO05D001790 6.0e-10 70.1 417 24.5
Actinidia04995 Actinidia chinensis HOM05D001827 ORTHO05D001790 1.0e-09 69.3 401 25.2
MD11G1032400 Malus domestica HOM05D001827 ORTHO05D001790 1.0e-09 69.3 406 24.1
CAN.G623.22 Capsicum annuum HOM05D001827 ORTHO05D001790 1.3e-09 68.9 595 24.4
PSO210G4928 Papaver somniferum HOM05D001827 ORTHO05D001790 1.3e-09 68.9 408 26.2
CSS0010892 Camellia sinensis var. sinensis HOM05D001827 ORTHO05D001790 2.3e-09 68.2 397 24.7
TWI39G0045 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 2.3e-09 68.2 405 26.4
PSO210G6911 Papaver somniferum HOM05D001827 ORTHO05D001790 3.0e-09 67.8 402 25.1
QL05p066984 Quercus lobata HOM05D001827 ORTHO05D001790 3.0e-09 67.8 585 23.1
TPR.G8584 Trifolium pratense HOM05D001827 ORTHO05D001790 3.0e-09 67.8 577 22.7
Aa31LG2G12390 Aethionema arabicum HOM05D001827 ORTHO05D001790 8.7e-09 66.2 547 23.6
ClCG10G004390 Citrullus lanatus HOM05D001827 ORTHO05D001790 8.7e-09 66.2 593 22.9
TWI77G0847 Tripterygium wilfordii HOM05D001827 ORTHO05D001790 8.7e-09 66.2 543 23.2
arahy.Tifrunner.gnm1.ann1.21F8WZ Arachis hypogaea HOM05D001827 ORTHO05D001790 1.1e-08 65.9 580 22.6
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 1.1e-08 65.9 544 22.8
Eucgr.L01393 Eucalyptus grandis HOM05D001827 ORTHO05D001790 1.1e-08 65.9 557 22.3
arahy.Tifrunner.gnm1.ann1.L4SZG2 Arachis hypogaea HOM05D001827 ORTHO05D001790 1.5e-08 65.5 577 22.5
Solyc07g065680.3 Solanum lycopersicum HOM05D001827 ORTHO05D001790 1.5e-08 65.5 581 22.7
TPR.G1999 Trifolium pratense HOM05D007878 ORTHO05D010022 1.5e-08 65.5 586 22.4
Atru.chr1.2237 Acer truncatum HOM05D001827 ORTHO05D001790 1.9e-08 65.1 544 23.2
arahy.Tifrunner.gnm1.ann1.L6LFU0 Arachis hypogaea HOM05D001827 ORTHO05D001790 1.9e-08 65.1 577 22.5
Eucgr.E03845 Eucalyptus grandis HOM05D001827 ORTHO05D001790 1.9e-08 65.1 557 22.3
Lalb_Chr15g0088281 Lupinus albus HOM05D001827 ORTHO05D001790 1.9e-08 65.1 581 22.7
PGSC0003DMG400022271 Solanum tuberosum HOM05D001827 ORTHO05D001790 1.9e-08 65.1 579 22.6
Manes.09G083200 Manihot esculenta HOM05D001827 ORTHO05D001790 5.7e-08 63.5 550 23.8
SMO364G0141 Selaginella moellendorffii HOM05D001827 ORTHO05D001790 5.7e-08 63.5 541 22.4
BcaB03g13203 Brassica carinata HOM05D001827 ORTHO05D001790 7.4e-08 63.2 331 26.0
Psat2g006880 Pisum sativum HOM05D001827 ORTHO05D001790 7.4e-08 63.2 600 22.5
MSTRG.22991 Avicennia marina HOM05D007878 ORTHO05D010022 9.6e-08 62.8 134 35.1
C03p16210 Brassica napus HOM05D001827 ORTHO05D001790 2.1e-07 61.6 556 21.8
MD03G1029200 Malus domestica HOM05D001827 ORTHO05D001790 2.1e-07 61.6 333 26.7
Sabra16G0242100 Salix brachista HOM05D001827 ORTHO05D001790 2.1e-07 61.6 404 24.0
Lalb_Chr18g0057361 Lupinus albus HOM05D001827 ORTHO05D001790 3.7e-07 60.8 574 20.9
Lj6g0015113 Lotus japonicus HOM05D001827 ORTHO05D001790 4.8e-07 60.5 410 23.7
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 4.8e-07 60.5 466 22.7
FvH4_3g42741 Fragaria vesca HOM05D001827 ORTHO05D001790 6.3e-07 60.1 576 21.7
Lalb_Chr13g0304391 Lupinus albus HOM05D001827 ORTHO05D001790 8.2e-07 59.7 578 23.0
Carub.0007s2421 Capsella rubella HOM05D001827 ORTHO05D001790 1.8e-06 58.5 562 22.6
THA.LOC104815691 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 1.8e-06 58.5 376 26.9
AL1G23420 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 2.4e-06 58.2 359 25.1
A10p13080 Brassica napus HOM05D001827 ORTHO05D001790 2.4e-06 58.2 118 38.1
Lalb_Chr07g0176921 Lupinus albus HOM05D001827 ORTHO05D001790 2.4e-06 58.2 585 21.2
Hund23030 Selenicereus undatus HOM05D001827 ORTHO05D001790 2.4e-06 58.2 576 22.2
AT1G12150 Arabidopsis thaliana HOM05D001827 ORTHO05D001790 3.1e-06 57.8 359 25.3
BcaC04g20191 Brassica carinata HOM05D001827 ORTHO05D001790 3.1e-06 57.8 118 38.1
Lsat_1_v5_gn_5_21161 Lactuca sativa HOM05D007878 ORTHO05D010022 3.1e-06 57.8 389 23.4
vmacro15728 Vaccinium macrocarpon HOM05D001827 ORTHO05D001790 3.1e-06 57.8 410 20.5
HPP92_019275 Vanilla planifolia HOM05D002198 ORTHO05D002409 4.1e-06 57.4 611 21.6
A03p13780 Brassica napus HOM05D001827 ORTHO05D001790 5.3e-06 57.0 556 21.9
Psat4g049000 Pisum sativum HOM05D007878 ORTHO05D010022 5.3e-06 57.0 571 21.0
arahy.Tifrunner.gnm1.ann1.H3BYSM Arachis hypogaea HOM05D007878 ORTHO05D010022 6.9e-06 56.6 145 32.4
arahy.Tifrunner.gnm1.ann1.0CJ0KN Arachis hypogaea HOM05D007878 ORTHO05D010022 9.0e-06 56.2 150 32.7
AUR62035660 Chenopodium quinoa HOM05D001827 ORTHO05D001790 9.0e-06 56.2 578 21.5


User provided reference genes

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