Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 3.9e-168 594.7 304 100.0
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 7.1e-162 573.9 304 97.4
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 3.7e-102 375.6 300 65.0
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 3.2e-101 372.5 276 68.1
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 7.3e-98 361.3 304 62.8
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 6.1e-97 358.2 277 65.7
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.3e-96 356.3 275 67.6
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 5.8e-95 351.7 281 64.1
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 9.8e-95 350.9 278 65.8
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.9e-94 349.4 278 62.6
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 2.9e-94 349.4 258 66.7
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 4.9e-94 348.6 296 64.2
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.0e-92 343.2 301 61.1
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 2.7e-92 342.8 301 61.5
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 2.7e-92 342.8 307 57.3
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 3.5e-92 342.4 268 62.7
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.6e-92 342.0 279 64.2
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 1.7e-91 340.1 278 61.5
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.7e-91 340.1 278 61.5
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 1.7e-91 340.1 271 64.2
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 2.3e-91 339.7 279 63.4
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 3.0e-91 339.3 281 61.9
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 5.0e-91 338.6 307 60.6
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 6.6e-91 338.2 278 61.5
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.1e-90 337.4 306 57.5
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.5e-90 337.0 306 58.8
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 4.3e-90 335.5 294 58.2
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 1.2e-89 334.0 269 63.2
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 1.6e-89 333.6 285 60.0
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.1e-89 333.2 265 63.8
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 3.6e-89 332.4 248 64.1
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.1e-88 330.9 236 69.5
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.1e-88 330.9 303 60.1
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 2.3e-88 329.7 303 59.4
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 4.0e-88 328.9 314 60.2
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.5e-87 327.0 279 60.9
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 2.0e-87 326.6 304 57.2
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 2.0e-87 326.6 304 57.2
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 2.0e-87 326.6 304 57.2
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 3.4e-87 325.9 299 57.2
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 3.4e-87 325.9 299 57.9
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.4e-87 325.5 291 59.8
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 4.4e-87 325.5 284 60.2
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 5.8e-87 325.1 271 61.6
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 7.5e-87 324.7 304 57.2
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 7.5e-87 324.7 265 60.8
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.3e-86 323.9 265 60.8
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 1.7e-86 323.6 303 57.8
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 2.2e-86 323.2 297 57.6
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 2.2e-86 323.2 303 57.4
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 2.2e-86 323.2 304 56.9
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 3.7e-86 322.4 278 58.6
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.4e-85 319.7 290 58.6
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 2.4e-85 319.7 267 60.7
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 2.4e-85 319.7 306 58.2
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 2.4e-85 319.7 269 61.0
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.1e-85 318.9 265 60.4
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 5.4e-85 318.5 303 56.8
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 7.1e-85 318.2 267 59.9
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 7.1e-85 318.2 281 58.7
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 3.5e-84 315.8 253 64.4
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 6.0e-84 315.1 295 55.9
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 7.8e-84 314.7 267 60.3
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.3e-83 313.9 283 56.9
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.7e-83 313.5 259 64.1
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 3.0e-83 312.8 271 62.4
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 5.1e-83 312.0 296 56.1
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.1e-82 310.8 280 58.6
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.1e-82 310.8 249 61.8
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-82 310.8 233 63.9
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.5e-82 310.5 313 55.3
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.5e-82 310.5 339 52.5
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 4.3e-82 308.9 256 61.7
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 9.5e-82 307.8 260 60.0
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 2.8e-81 306.2 301 54.8
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 8.1e-81 304.7 233 65.2
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 2.3e-80 303.1 296 55.4
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 4.0e-80 302.4 208 71.6
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 4.0e-80 302.4 327 53.8
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.2e-79 300.8 323 53.3
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 1.5e-79 300.4 233 64.4
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.5e-79 300.4 259 61.8
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.0e-79 300.1 235 63.4
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.6e-79 299.7 259 61.4
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 8.3e-78 294.7 262 58.4
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 2.7e-76 289.7 272 58.5
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 3.0e-75 286.2 279 56.3
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 6.6e-75 285.0 342 47.7
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 7.3e-74 281.6 302 51.0
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 9.6e-74 281.2 278 56.1
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 9.6e-74 281.2 278 56.1
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 9.6e-74 281.2 278 56.1
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 6.2e-73 278.5 234 60.7
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.4e-72 277.3 264 57.2
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 3.1e-72 276.2 299 52.5
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.1e-72 276.2 266 57.5
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 4.0e-72 275.8 324 53.4
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.2e-70 270.0 256 56.2
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.0e-68 261.9 323 47.7
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 7.8e-68 261.5 207 67.1
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 2.3e-67 260.0 212 62.3
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 3.9e-67 259.2 272 49.6
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 2.8e-65 253.1 241 58.5
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 2.4e-64 250.0 248 56.0
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 6.9e-64 248.4 217 57.6
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 1.2e-63 247.7 431 37.8
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 2.6e-63 246.5 256 52.7
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.6e-63 246.5 213 59.2
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 8.7e-59 231.5 230 50.0
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.0e-55 220.3 232 50.0
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.2e-53 213.0 229 48.0
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 4.2e-53 212.6 197 56.9
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.8e-48 197.2 161 57.8
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 9.0e-48 194.9 173 59.5
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 5.8e-47 192.2 151 62.9
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 7.1e-45 185.3 169 56.8
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.8e-41 173.3 117 76.9
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 7.6e-39 165.2 151 51.0
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 3.8e-38 162.9 114 65.8
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 1.4e-37 161.0 129 62.0
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 3.9e-35 152.9 130 63.8
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.8e-32 144.1 232 40.1
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 2.6e-31 140.2 88 72.7
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.9e-30 136.7 91 73.6
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 8.5e-30 135.2 73 84.9
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 7.2e-29 132.1 73 80.8
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.2e-25 120.6 67 85.1
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 2.4e-24 117.1 71 77.5
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.4e-24 117.1 71 77.5
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.4e-24 117.1 71 77.5
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 1.5e-23 114.4 113 54.9
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 1.5e-18 97.8 74 59.5
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.5e-18 97.8 80 63.8
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 1.2e-15 88.2 132 40.9
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 1.7e-14 84.3 44 84.1
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.1e-13 81.6 46 80.4
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 9.4e-13 78.6 65 56.9
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 2.1e-12 77.4 42 81.0
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 3.6e-12 76.6 72 55.6
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 2.6e-10 70.5 46 69.6
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.3e-09 65.9 191 27.7
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 4.1e-08 63.2 84 44.0
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 1.6e-07 61.2 73 41.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 3.5e-07 60.1 187 26.2
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 1.0e-06 58.5 37 75.7


User provided reference genes

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